PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G0608 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 38363.2 Da PI: 4.5423 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161 | 4.7e-50 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtd elv++yLk+kv g+kl l +vi++vd+yk+ PwdLp +++k+++ +wyf+++ +kkya+g+r nrat gyWkatgkd++v+ + Gh_D11G0608 6 LPPGFRFHPTDVELVMYYLKRKVLGQKLLL-NVIAKVDVYKFAPWDLPdmSCMKTGDLKWYFYCPIEKKYARGDRVNRATIFGYWKATGKDRPVKY-N 101 79*************************988.99**************96448899999**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ge+vg+ ktLvf+kg+ap+g +tdWvmheyrle Gh_D11G0608 102 GEVVGMIKTLVFHKGKAPRGDRTDWVMHEYRLE 134 99*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-57 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.815 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-25 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGKNTLPPGF RFHPTDVELV MYYLKRKVLG QKLLLNVIAK VDVYKFAPWD LPDMSCMKTG 60 DLKWYFYCPI EKKYARGDRV NRATIFGYWK ATGKDRPVKY NGEVVGMIKT LVFHKGKAPR 120 GDRTDWVMHE YRLEEKILAD RGPVQDMYML YVVFKKDGVG PRNGSQYGAP FKEEEWSDDE 180 QADVPGAGSL CGLSTVAVGG DNSSCVPESV CVGPSVESSG WCTQPSMGHT NGDVNVTTAI 240 DTNAYAAPTC ADAPEVPVVA VAEDVPTLLE APQPALVPQD QESNDNMLSM LECFFEEGAF 300 GTHEGQRRGN ATDSSFKDTP VSDEDDISIL LASFTDVDNS NNWSYPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-47 | 5 | 133 | 14 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.6003 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847245 | 0.0 | KC847245.1 Gossypium hirsutum NAC domain protein NAC68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016695043.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 3e-91 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A1U8K246 | 0.0 | A0A1U8K246_GOSHI; NAC domain-containing protein 82-like | ||||
STRING | Gorai.007G065300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 3e-93 | NAC domain containing protein 82 |
Publications ? help Back to Top | |||
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