PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0560
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 337aa    MW: 38568.9 Da    PI: 7.8122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0560genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.85e-07138159223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C++C ksF+r  nL+ H+r H
  Gh_D11G0560 138 FCEICRKSFKRDANLRMHMRAH 159
                  6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-6133160No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5134159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0063137159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.448137164IPR007087Zinc finger, C2H2
PfamPF128741.5E-4138157No hitNo description
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SMARTSM0035545188221IPR015880Zinc finger, C2H2-like
SMARTSM0035526226248IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSIPAEPFRT SSEYPGNGGP SRQQHDPIAL AADLRVPLQN LSTVKRRMDS LQDFLSLSVN  60
TNTLISKDQM DLVSSEIADA VHQIITNSAA LLSCAQKTHC RNSNPTPELK PEFEDSDEGE  120
PDVIEVDAVE LLSEHLHFCE ICRKSFKRDA NLRMHMRAHG DQYKTPEALA KKSENNSDVM  180
NPGRKTRFSC PYEGCNRNKK HHKFRSLKSV ICVRNHFKRS HCPKMYRCNR CHKKSFSILV  240
DLKVHLKHCG GKEEIKKWKC SCGNGFSRKD KLFRHISLFE GHMPAMVAEE DRKLKGIVAM  300
EEDEQKKACL EDGLFDDWLN GFDSLENYCL QDMLESW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694585.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A1U8JWG20.0A0A1U8JWG2_GOSHI; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRINGGorai.007G060600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16077813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.24e-70C2H2 family protein