PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0534
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 25504.4 Da    PI: 9.9144
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0534genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.6e-261059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ri+n+  rqvtfskRr+g++KKA+EL +LCdaev ++ifss+gklye++s
  Gh_D11G0534 10 RIDNSASRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSSGKLYEFAS 59
                 8***********************************************86 PP
2K-box821.4e-2776170498
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  +++ s+ +++ + +q+e+a Lk++++nLq ++R+l+Ge+L  L +++Lq+Le+qLe sl+ +R kK+++l+++ieel ++ + +++en +L kk+
  Gh_D11G0534  76 HQQLSNPSSEVKFWQREAAILKQQLQNLQDNHRQLMGEQLYGLRVEDLQNLENQLEMSLRGVRMKKERILTNEIEELNRRGNLIHQENVELFKKV 170
                  55556788999********************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.342161IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.03E-41278No hitNo description
SuperFamilySSF554551.44E-32291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014869.6E-2683170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.68586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSASRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS SGKLYEFAST  60
SMKSVIERYN TLKEEHQQLS NPSSEVKFWQ REAAILKQQL QNLQDNHRQL MGEQLYGLRV  120
EDLQNLENQL EMSLRGVRMK KERILTNEIE ELNRRGNLIH QENVELFKKV NLIRKENMEL  180
LKKDNKKECS DELRDMLLQF IPSKTHVCED IYIKDRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-23181181MEF2 CHIMERA
6byy_B6e-23181181MEF2 CHIMERA
6byy_C6e-23181181MEF2 CHIMERA
6byy_D6e-23181181MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556330.0KC155633.1 Gossypium hirsutum MADS box protein MADS38 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694583.11e-128PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP492e-95MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U8K0T31e-127A0A1U8K0T3_GOSHI; MADS-box transcription factor 23-like
STRINGGorai.007G058200.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-95AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]