PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0517
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 455aa    MW: 50761.1 Da    PI: 6.343
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0517genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.21.5e-93534522373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPilkfs 94 
                  ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl++ f++AL  r a+  s+ +k l++ +++++n s e++ +++     f++++P+++f+
  Gh_D11G0517  53 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLQALIVRAAK--SGSCKMLAAMANAHRNLSVETHTFSVielanFVDLTPWHRFG 148
                  79****************************************************..6666666666666666555555554445599*********** PP

         GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......v 182
                  + taN aIleaveg + +Hi+D++ ++++Q p+L++a+a+R egpp +++T+ g p+ +      ++ee+g++L +fA++ +v +ef+++        
  Gh_D11G0517 149 FTTANAAILEAVEGYSVIHIVDLSSTYCMQIPTLIDAIANRFEGPPLVKLTVPGVPKDVpplLDLTYEELGSKLVNFARSRNVMLEFRAVpsthadgF 246
                  *******************************************************99999888999************************99866665 PP

         GRAS 183 akrledleleeLrvkp.gEalaVnlvlqlhrll................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                  a+ +++l+l++L   + gEal++n++++lh+++                 +++  +s r+ +Lk++++l+P++ ++v+++ad++s++++ r+ +a++y
  Gh_D11G0517 247 ASLIDQLRLQHLVYAEaGEALVINCHMMLHYIPeetpsplpntnsnpytFQPTLNPSLRTMFLKALRGLNPTIAILVDEDADLTSNNLVCRLRSAFNY 344
                  66667777777777669****************************999867777777899************************************** PP

         GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                   +  +d++++ lp  s++r+++E+  + ++++nv+a+eg +r+er e++++W +r+++a F+ v++++++++++k++l +++  g+ +++e++ lvl+
  Gh_D11G0517 345 LWIPYDTVDTFLPIGSKQRQWYEAN-ICWKVENVIAHEGLQRVERVESKSRWVQRMRNAEFRGVSFGDETVSEVKTMLDEHA-AGWGLKKEDNDLVLT 440
                  *************************.********************************************************.99************* PP

         GRAS 362 WkdrpLvsvSaW 373
                  Wk++++v+++aW
  Gh_D11G0517 441 WKGHNVVFATAW 452
                  ************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.84526434IPR005202Transcription factor GRAS
PfamPF035145.3E-9153452IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MLQFTGTPSH FLHQIAPFSI PTMNKNQIHQ ARPWPGFPTS KGLASFGDAN CMEQLLVHCA  60
NAIESNDATL AQQILWVLNN IAPPDGDSNQ RLTSAFLQAL IVRAAKSGSC KMLAAMANAH  120
RNLSVETHTF SVIELANFVD LTPWHRFGFT TANAAILEAV EGYSVIHIVD LSSTYCMQIP  180
TLIDAIANRF EGPPLVKLTV PGVPKDVPPL LDLTYEELGS KLVNFARSRN VMLEFRAVPS  240
THADGFASLI DQLRLQHLVY AEAGEALVIN CHMMLHYIPE ETPSPLPNTN SNPYTFQPTL  300
NPSLRTMFLK ALRGLNPTIA ILVDEDADLT SNNLVCRLRS AFNYLWIPYD TVDTFLPIGS  360
KQRQWYEANI CWKVENVIAH EGLQRVERVE SKSRWVQRMR NAEFRGVSFG DETVSEVKTM  420
LDEHAAGWGL KKEDNDLVLT WKGHNVVFAT AWVPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-494745482474Protein SHORT-ROOT
5b3h_B3e-494745428420Protein SHORT-ROOT
5b3h_E3e-494745428420Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016731012.10.0PREDICTED: scarecrow-like protein 32 isoform X1
SwissprotQ9SN221e-179SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1U8MVZ90.0A0A1U8MVZ9_GOSHI; scarecrow-like protein 32 isoform X1
STRINGGorai.007G056200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein