PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G0311

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 295aa MW: 33285.1 Da PI: 6.3088

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G0311	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.5	5.2e-39	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkC ++C lapyfpa+q+k f+n+hklFG+sn++k+lk+l+++++ +am+s+ y+A++r + PvyG++gvi++l q++ l++e +++ Gh_D11G0311 10 ACAACKYQRRKCIPECLLAPYFPADQTKVFQNAHKLFGVSNIVKILKSLDPSQHAEAMRSIKYQANVRDKFPVYGCLGVIRQLYYQIQLLEEEFHSVL 107 7*******************************************************************************************998876 PP DUF260 99 e 99 + Gh_D11G0311 108 S 108 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.161	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-37	10	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MTLKSGTTSA CAACKYQRRK CIPECLLAPY FPADQTKVFQ NAHKLFGVSN IVKILKSLDP 60 SQHAEAMRSI KYQANVRDKF PVYGCLGVIR QLYYQIQLLE EEFHSVLSQL EMYRQHHHEV 120 PSQLELGMAP PTNGLHFLTA VSDMPVSMQH SYSNSNNIGY CSSYVDSKDQ NNNKSNSNSN 180 SNNNNNSLWI QHPFLATNNS SSSNSNENNP LMAIQSQLLV SNTQPLVIQH EVVQDYDELH 240 PFFDTIDDRQ FFIHSKEPYD SSCEDSAKET TQAIELVPNN ELKNAAACFS LTSVH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-30	6	113	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-30	6	113	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614899	0.0	JX614899.1 Gossypium hirsutum clone NBRI_GE58613 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016694706.1	0.0	PREDICTED: LOB domain-containing protein 27-like
Swissprot	Q9STS6	5e-59	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A1U8JWQ1	0.0	A0A1U8JWQ1_GOSHI; LOB domain-containing protein 27-like
STRING	Gorai.007G034800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6303	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-55	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]