PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 288aa MW: 32368.2 Da PI: 7.2641

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G0266	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	126	180	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee+F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k Gh_D11G0266 126 RKKLRLSKDQSAILEECFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 180 788899***********************************************98 PP
2	HD-ZIP_I/II	129.5	1.3e-41	126	215	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEe+F+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Gh_D11G0266 126 RKKLRLSKDQSAILEECFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 215 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	5.3E-27	2	98	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	2.3E-18	113	176	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.47E-19	113	183	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.119	122	182	IPR001356	Homeobox domain
SMART	SM00389	1.1E-16	124	186	IPR001356	Homeobox domain
Pfam	PF00046	7.7E-17	126	180	IPR001356	Homeobox domain
CDD	cd00086	1.77E-15	126	183	No hit	No description
PRINTS	PR00031	1.9E-5	153	162	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	157	180	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.9E-5	162	178	IPR000047	Helix-turn-helix motif
SMART	SM00340	4.2E-27	182	225	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.2E-11	182	216	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MMVGKDQDLG LSLSLSSSQN HHLLQLNLSP SLVPSSANQC YSPSDPNTES LRAETRSFLK 60 GIDVNRQPST VDCEEEAGVS SPNSTISSSL SGKRSEREGN NNGDELEIER ASSHGISDEE 120 DGDTSRKKLR LSKDQSAILE ECFKEHNTLN PKQKLALAKQ LGLRPRQVEV WFQNRRARTK 180 LKQTEVDCEF LKRCCENLTE ENRRLQKEVQ ELRALKLSPQ FYMQMNPPTT LTMCPSCERV 240 GVPQTASSAV DPRSHHQLVQ SHQQRHITIN PWAPSAPIPH RPFDALHP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	130	SRKKLRL
2	174	182	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9857	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269\|PubMed:12492842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269\|PubMed:12492842}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ848481	0.0	GQ848481.1 Gossypium arboreum cultivar FDH-171 homeodomain associated leucine zipper protein (HDZip) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016695777.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT4-like
Swissprot	P46601	1e-112	HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBL	A0A1U8JZS8	0.0	A0A1U8JZS8_GOSHI; homeobox-leucine zipper protein HAT4-like
STRING	Gorai.007G029200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1563	26	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	2e-95	homeobox protein 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697]