PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G0086 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 25320.2 Da PI: 4.4838 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.2e-16 | 71 | 119 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa a++ a+++l+g Gh_D11G0086 71 VYRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAALALKG 119 59***6..668*********843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.7E-28 | 71 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-10 | 71 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.56 | 71 | 127 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-18 | 71 | 128 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.3E-29 | 71 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.51E-28 | 72 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MIQISAILHT NMTESDSSST NVPPKDQPPP PTVPIPDAPP QEQSPKPSST PLISSKEGVS 60 GNSTSRKLPA VYRGVRSRSG KWVSEIREPR KTTRIWLGTY PTPEMAATAY DVAALALKGP 120 DAELNFPDMV HSYPKVGSTS ATDIRAAAAS AAASRLLPKA VTNTGSSSKN EDTTSTTAME 180 ITCSGQEFID EEELLNFPNL MVDMAGGMLV SPPNWINSPP SDDSPDNSDV DTLWTYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-12 | 72 | 133 | 15 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.1431 | 0.0 | boll| leaf| ovule| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ224382 | 0.0 | DQ224382.1 Gossypium hirsutum DRE-binding protein 3a (DBP3a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016686544.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9CAN9 | 5e-48 | ERF26_ARATH; Ethylene-responsive transcription factor ERF026 | ||||
TrEMBL | A0A1U8JE65 | 1e-169 | A0A1U8JE65_GOSHI; ethylene-responsive transcription factor ERF027-like | ||||
STRING | Gorai.007G010200.1 | 1e-169 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 5e-34 | ERF family protein |