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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G0061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 328aa MW: 37599.6 Da PI: 9.0775 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.6 | 6.2e-40 | 107 | 248 | 1 | 131 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg.. 88 aa k+drhski T+ g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qakp+i +l+++ + s++ +++e++++s+ + ++ Gh_D11G0061 107 AASKTDRHSKINTANGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLVQAKPEITKLMNNsnnsfgfaK-SPS--STSETEVVSGIDKAAAid 201 5889*************************************************************666554431.111..122233333332222255 PP TCP 89 ....kaaksaakskksqksaasalnlakesrakarararertrekmr 131 k +s++++k+++++++s++ la++ r kar+ra+ rt+ek++ Gh_D11G0061 202 gnipKGTPSKKEKKERRQRKTSFRPLARDMRVKARERAKARTKEKNM 248 66667777777777777777789********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-40 | 109 | 248 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.407 | 110 | 168 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.009 | 229 | 246 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MFPSNSNGNN NDPITYLDHS ILPLSFFYSP SSPNYNQCEL LQLDEYDYDV LWNQQQHFDD 60 DDDQFLHQTT LLTDNSVSET IVNLPDCRHN NTTTDIHQQP MPRKRPAASK TDRHSKINTA 120 NGPRDRRMRL SLDVAREFFG LQDMLGYDKA SRTVEWLLVQ AKPEITKLMN NSNNSFGFAK 180 SPSSTSETEV VSGIDKAAAI DGNIPKGTPS KKEKKERRQR KTSFRPLARD MRVKARERAK 240 ARTKEKNMSL RLNNETRDND PNRFGSSWSS TWTKQPGIQN HHNNNNNTVF QADNINIHGD 300 RMIWSLNCLQ NTGLINQEAQ SFGKPREA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX622938 | 0.0 | JX622938.1 Gossypium hirsutum clone NBRI_GE69896 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016684619.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A1U8J8T6 | 0.0 | A0A1U8J8T6_GOSHI; transcription factor CYCLOIDEA-like | ||||
STRING | Gorai.007G007500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 6e-30 | TCP family protein |