PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G2627
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 888aa    MW: 97480.5 Da    PI: 7.4998
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G2627genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18342441198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  +++lv+
  Gh_D10G2627 342 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDVVTFSRLE-PGGKLVM 437
                  89**************************555566778***************9989999999***9.********************665.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Gh_D10G2627 438 GFRK 441
                  7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-31333449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-20339441IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-22340441No hitNo description
SMARTSM010194.7E-20342443IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194342443IPR003340B3 DNA binding domain
PfamPF023629.3E-16342441IPR003340B3 DNA binding domain
PROSITE profilePS5105014.58569619IPR011124Zinc finger, CW-type
PfamPF074961.3E-12574616IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MTSTSVATSS SRICFNSVCN DLKSERPRKG WQLRTGELAE LCDRCASIYD EGRFCDAFHS  60
NASGWRTCES CGKRVHCGCI VSAYAFALLD AGGILCIACS RKNAVLGPNS SWPPSLLFNS  120
SLPERFKDCS AKGWSQLTGS GPAPWRQAPG LFNSSTPQPE LHSRVPYEVD LSTGIDRLNV  180
SERLSIPSLE KKKNEDFPER LMNGSLKPSA HDIHENGNTG INCEEQHTSC LTKPQLPSLK  240
EDSSNPPFGL AVPYTSIDEA NGQMGVSGTH LRPNPQPSLA KQFHSNPHNG LDSSGETQMR  300
NGRPRPDGRG RNQLFPRYWP RFTDQDLQQI SADSNSIITP LFEKMLSASD AGRIGRLVLP  360
KKCAEAYFPP ISQPEGLPLK VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA  420
GDVVTFSRLE PGGKLVMGFR KASAASASEQ ENEAKNSNGV STHGDAELAD PSSWSKVDKS  480
GYIAKEALGT KVAVPRKRKN SVLGSKSKRL RIDNEDMIEL KLTWEEAQGL LRPPPNHVAN  540
VVSIEGFEFE EYEDAPVLGK PTIFATDKSG EKIQWAQCED CFKWRRLPSD VLLPSKWTCS  600
SNSWDPERSS CSATQELTAE ELENLLPHCN LAASKKMKAA KQESENVDAL EGLDTLANLA  660
ILGEGGVLPA SQATTKHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCQ TVKRRFRTLM  720
LRREKKQSQK EADATRKKQQ PSLPDKVVDD EPLPCTTSAG NSSLNPEKVV SENLDDDTNR  780
VKSSSSPFKG QIDLNIQPER EEELSPGSDS GGTMRLLQDA TDKYHRQQSI LSSSGNSNIE  840
VTQTQPGSGT ELGKINSSID LRASHRDADM DHPAIFPIKT FAPTSATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C4e-643204451126B3 domain-containing transcription repressor VAL1
5yzz_C4e-643204451126B3 domain-containing transcription repressor VAL1
5z00_C4e-643204451126B3 domain-containing transcription repressor VAL1
5z00_G4e-643204451126B3 domain-containing transcription repressor VAL1
5z00_K4e-643204451126B3 domain-containing transcription repressor VAL1
5z00_M4e-643204451126B3 domain-containing transcription repressor VAL1
6j9a_A4e-643204452127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.200610.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455056.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0D2UMY40.0A0A0D2UMY4_GOSRA; Uncharacterized protein
STRINGGorai.011G022400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-152HSI2-like 1