PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G2570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 227aa MW: 25148 Da PI: 7.2552 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00018 | 33 | 53 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+ F+++ L H+ +H Gh_D10G2570 33 CRICDHIFTSSRALFDHMELH 53 ******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 33 | 53 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDASRNANMR EAVPLLNHAR REQPGSAEEL IACRICDHIF TSSRALFDHM ELHLLLDEAN 60 AKRQLLLSHM VVAPQSGVSA NHLIQNHPPP PPALQQDSQQ QPRLVVPRQR FVRILPYPPL 120 PSAIHPFLIG AGAPQQWTIR PPLVSYQPVV NQPLPTAPTP SPTAAEVAAT AARQIMRMSR 180 SRTNLFTRPF LNQLEANLLI EGMAAMAERE LEGDCVGDQE VDVTLKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5S9I2 | 1e-163 | A0A2P5S9I2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G175600.1 | 1e-162 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24833 | 3 | 4 |