PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G2319 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 41606.8 Da PI: 6.5289 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.5 | 1.4e-45 | 17 | 146 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppG+rF+P+deelv++yL+ k++g +l+ + i+e+++y+++P++L + + ++ ekewyfF++r++ky++g+r+ r++ sgyWkatg dkev+ Gh_D10G2319 17 LPPGYRFKPRDEELVNYYLRLKISGLPLPP-NRIREANLYRHDPETLTAmnkytSSNEVEKEWYFFTPRERKYTNGSRPARKAGSGYWKATGADKEVI 113 79*************************999.77**************84354433333556************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyr 127 kg+++g+kktLvfy+g+ p+g kt W+mhey Gh_D10G2319 114 L-KGKKIGCKKTLVFYEGKPPRGFKTYWTMHEYV 146 *.9999***************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-51 | 16 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.411 | 17 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-24 | 18 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MLKKQKEEEE EEYFRLLPPG YRFKPRDEEL VNYYLRLKIS GLPLPPNRIR EANLYRHDPE 60 TLTAMNKYTS SNEVEKEWYF FTPRERKYTN GSRPARKAGS GYWKATGADK EVILKGKKIG 120 CKKTLVFYEG KPPRGFKTYW TMHEYVSSEA PVRVRHGKED MKLDNWVLCR LYKNRREAKQ 180 KHRIPQEGNG LECQEKVEPH KMAEPVSEPI NKVAPPVYDQ YQQREVQPFN MNIGQDTNWF 240 PELDNLMPVS DEYGNYYMFD NNPTHGGFQQ VPNYDDFVTN AAAAAPAPFS STFPLDNQFQ 300 FMGNAGFNLP PPPLQFQPQW PAPPSPPQQF SGANTGFDFS VDEYFLDPEF GMSPSEFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-47 | 5 | 177 | 3 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847254 | 0.0 | KC847254.1 Gossypium hirsutum NAC domain protein NAC77 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D2VSC0 | 0.0 | A0A0D2VSC0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G269500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17827 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 3e-53 | NAC domain containing protein 32 |