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Plant Transcription
Factor Database
|
Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_D10G1921 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
SRS |
| Protein Properties |
Length: 278aa MW: 29965.2 Da PI: 6.9461 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D10G1921 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 185 | 2.9e-57 | 85 | 238 | 6 | 153 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklssaeskk 98
+ C+dCGn+akk+C ++RCRtCCksrg+dCathvkstWvpaa+r++r+ + ++ kr+r l+ ++++a++s + + ++ ++
Gh_D10G1921 85 KVCRDCGNRAKKECGYSRCRTCCKSRGYDCATHVKSTWVPAARRKDRKVLVIGDDDGGGNGGwssgsSSCGGKRQRVLNLTSNAASKSLNFEAGTCHQ 182
57*********************************************888777655544433555545666788888888999999999999999888 PP
DUF702 99 eletss.lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+ +++ lP +v+++avfrc++v++++dge e+aYq++v+i+GhvfkG+Lyd+G++
Gh_D10G1921 183 DSGFKEsLPVRVQAPAVFRCIQVTAISDGESEIAYQATVNISGHVFKGFLYDHGVD 238
8876655***********************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MLGLHNIFLI APPPQENQQQ QAPPPPPPPP QPFNQNYNLT DTNLWTLKRS TAQESIPVFQ 60
KKDGALNNVE EDDDDESGAA GGCFKVCRDC GNRAKKECGY SRCRTCCKSR GYDCATHVKS 120
TWVPAARRKD RKVLVIGDDD GGGNGGWSSG SSSCGGKRQR VLNLTSNAAS KSLNFEAGTC 180
HQDSGFKESL PVRVQAPAVF RCIQVTAISD GESEIAYQAT VNISGHVFKG FLYDHGVDVK 240
NEFPCISKVV FESSSSGRDR DSSSPVVDPA NTFAASGD
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ108557 | 2e-41 | DQ108557.1 Corchorus olitorius SSR marker J159-M13F genomic sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 2e-48 | Lateral root primordium (LRP) protein-related |
