PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G1689
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 128aa    MW: 14240.2 Da    PI: 6.5949
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G1689genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1573e-4917105290
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                  reqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvtseasdkc++e+rkting+d++wal tlGf+dy++pl+ yl+k 
  Gh_D10G1689  17 REQDRLLPIANVGRIMKQMLPPNAKISKEAKETMQECVSEFISFVTSEASDKCRKERRKTINGEDICWALVTLGFDDYAAPLRRYLNKL 105
                  89************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-4812114IPR009072Histone-fold
SuperFamilySSF471139.43E-3719120IPR009072Histone-fold
PfamPF008082.2E-282286IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.1E-165068No hitNo description
PROSITE patternPS0068505369IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.1E-166987No hitNo description
PRINTSPR006156.1E-1688106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MAENVGGSGS NDDDGFREQD RLLPIANVGR IMKQMLPPNA KISKEAKETM QECVSEFISF  60
VTSEASDKCR KERRKTINGE DICWALVTLG FDDYAAPLRR YLNKLITTTV MKASMIGSSR  120
NSNLGPFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-4217104289Transcription factor HapC (Eurofung)
4g92_B7e-4217104289Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453013.19e-73PREDICTED: nuclear transcription factor Y subunit B-1-like
RefseqXP_016700599.19e-73PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotO822482e-50NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0D2TAA96e-90A0A0D2TAA9_GOSRA; Uncharacterized protein
STRINGGorai.011G189100.11e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-53nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]