PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 309aa MW: 34521.4 Da PI: 6.3408

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G1679	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.9	4.4e-17	47	95	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta eAa a+++a+ +++g Gh_D10G1679 47 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAAISMKG 95 56****.******965...5*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.8E-32	46	109	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.31	46	103	IPR001471	AP2/ERF domain
CDD	cd00018	2.78E-29	46	102	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.4E-27	47	102	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-7	47	58	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-20	47	103	IPR016177	DNA-binding domain
Pfam	PF00847	1.5E-10	49	95	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-7	69	85	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDKGYGYEPL PQAHHLASTF MMLQRNKSSC QSGERRGRRK AAEPGRFLGV RRRPWGRYAA 60 EIRDPTTKER HWLGTFDTAH EAALAYDRAA ISMKGTQART NFVYFDHNNN TAFHSIMSPS 120 DVQSAVLPTP YHFLDLTTPQ SRPKQASNHS FAPQPDISHS ETKTLTQPNN TKGPIPLSSA 180 DNGFFFTNND DNSGNLACIV PYNCLKPPSN KSIDNQSQAL PKSNDIIGFP GFNELDQQGN 240 FMSDQQPWEI NSFELEAIFN HPPLIIGDEC TGTFYPSSYD MIPQPISSLD TCCFPLPSFG 300 DFVDLGYSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-20	37	102	5	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the early stages of lateral root primordia formation (PubMed:17630277). Expressed in early floral meristem (stage 1 to 2) (PubMed:19482972). {ECO:0000269\|PubMed:17630277, ECO:0000269\|PubMed:19482972}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250\|UniProtKB:Q9LND1, ECO:0000269\|PubMed:17630277, ECO:0000269\|PubMed:19482972, ECO:0000269\|PubMed:23749813}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17630277, ECO:0000269\|PubMed:23749813}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016700596.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF086-like
Swissprot	Q6J9Q2	4e-50	ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBL	A0A1U8KDL9	0.0	A0A1U8KDL9_GOSHI; ethylene-responsive transcription factor ERF086-like
STRING	Gorai.011G188200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5487	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18560.1	2e-46	ERF family protein

Publications ? help Back to Top
Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Chandler JW,Werr W DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis. J. Exp. Bot., 2017. 68(13): p. 3457-3472 [PMID:28859377] Chandler JW Class VIIIb APETALA2 Ethylene Response Factors in Plant Development. Trends Plant Sci., 2018. 23(2): p. 151-162 [PMID:29074232]