 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_D10G1499 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HSF |
| Protein Properties |
Length: 357aa MW: 41415.5 Da PI: 5.5002 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D10G1499 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 113.2 | 1.7e-35 | 42 | 134 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+y+i++d++++++isw + +nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv++++ weF +++F++g+++ll++i+
Gh_D10G1499 42 FLTKTYDIIDDSSTNNIISWGRANNSFIVWDPQAFSMTLLPRFFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFGNEKFHRGQRHLLKNIR 129
9********************999******************************************99.........******************** PP
XXXXX CS
HSF_DNA-bind 99 rkkse 103
r+k++
Gh_D10G1499 130 RRKTH 134
**986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MNPYGRVKEE FPGASSSYPA GMPSMVTAQQ MKGLHDAGPP PFLTKTYDII DDSSTNNIIS 60
WGRANNSFIV WDPQAFSMTL LPRFFKHNNF SSFVRQLNTY GFRKVDTDRW EFGNEKFHRG 120
QRHLLKNIRR RKTHQPQASQ YALDHCVEVG RFGLDGEIDR LRRDKQVLMV ELVKLRQQQQ 180
NTRTCLLTVE ERLRKTEMKQ QQMMSFLAKA MQNPSFVQQL IQQNDRSNEL EEAITKKRQR 240
RIDQRSMDVE TSEILGVKTE PEGYGVADFE VTELDKLVMN LQRLTGSQNN IELEHVEESK 300
DHGSKGKSLD EGFWDDLMDG DTHDIDQEIS VLDVEEEDEQ YVDVLVEQLR YLGSSSK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 1e-23 | 37 | 133 | 12 | 122 | Heat shock factor protein 1 |
| 5d5u_B | 1e-23 | 33 | 133 | 17 | 131 | Heat shock factor protein 1 |
| 5d5v_B | 1e-23 | 33 | 133 | 17 | 131 | Heat shock factor protein 1 |
| 5d5v_D | 1e-23 | 33 | 133 | 17 | 131 | Heat shock factor protein 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
