PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 182aa MW: 20541.1 Da PI: 6.7841

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G1003	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.1	9.3e-18	37	87	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GVr ++ +gr+v+eIr p g+++r++lg+fg++e+Aa+a++ a+ l+g Gh_D10G1003 37 SPFRGVRKRR-WGRYVSEIRLP---GQKTRIWLGSFGSPEMAARAYDSAAFFLKG 87 679**887.******8...557********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	20.705	38	95	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-32	38	101	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.18E-19	38	96	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.3E-27	39	96	IPR001471	AP2/ERF domain
Pfam	PF00847	3.7E-11	39	87	IPR001471	AP2/ERF domain
CDD	cd00018	9.06E-27	39	97	No hit	No description
PRINTS	PR00367	1.1E-10	39	50	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-10	77	97	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MSLNEKEPCE FPSQTPAQPQ PNPPRVAKKR TRQDNHSPFR GVRKRRWGRY VSEIRLPGQK 60 TRIWLGSFGS PEMAARAYDS AAFFLKGDSA ILNFPELVGS LPRPESCSRR DIQSAAAKAA 120 LQESVGRVKD EEGPESFGWW DAVGMAAFEE VKASPLRFDS MEGELLSFME DDHHFFTSCF 180 EL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-16	36	96	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	45	KKRTRQDNHSPFRGVRKRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9749	0.0	boll\| embryo\| ovule\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by cold stress. {ECO:0000269\|PubMed:11798174}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP780194	0.0	KP780194.1 Gossypium hirsutum C-repeat binding factor 11 (CBF11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016698783.1	1e-132	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q39127	1e-33	TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBL	A0A141AX52	1e-131	A0A141AX52_GOSHI; C-repeat binding factor 11
TrEMBL	A0A2P5SR68	1e-131	A0A2P5SR68_GOSBA; Uncharacterized protein
STRING	Gorai.011G113300.1	1e-131	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20558	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25810.1	4e-36	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]