 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_D10G0992 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 287aa MW: 31804.9 Da PI: 4.5234 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D10G0992 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.1 | 3.4e-19 | 61 | 114 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ +++ +LA++lgL+ rqV vWFqNrRa++k
Gh_D10G0992 61 KKRRLSVDQVKALEKNFEVENKLEPDRKSKLAQELGLQPRQVAVWFQNRRARWK 114
4558999**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 127.9 | 4.3e-41 | 61 | 152 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkrrls +qvk+LE++Fe e+kLep+rK++la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + ++L++e+e+L ++++e
Gh_D10G0992 61 KKRRLSVDQVKALEKNFEVENKLEPDRKSKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKTSYESLKLNYNNLRHENEDLLKQISE 152
9**************************************************************************************99976 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MKRLGSSDSL SALMSICPTS DEHSPRNNNN VYSREFQSML EGFDEEGCFE ELTVGHGGGA 60
KKRRLSVDQV KALEKNFEVE NKLEPDRKSK LAQELGLQPR QVAVWFQNRR ARWKTKQLER 120
DYGVLKTSYE SLKLNYNNLR HENEDLLKQI SELKAKLIEP PPGSSLGTSS EPAEVNCESF 180
NDGGGNGSVG GGGDTFFPDL KDGSSDSDSS AILNEENNSG GDMEGGSPNN GAASSPSSMN 240
NCFQLFKTTY QTPQYVKMEE HDFISSTADE VCNFFSDEQA PSLQWWI
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 108 | 116 | RRARWKTKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX964398 | 2e-56 | JX964398.1 Gossypium hirsutum clone NBRI_TRANS-667 microsatellite sequence. |
