PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0959
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 475aa    MW: 52028 Da    PI: 6.8292
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0959genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.81.9e-23209253145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+ep rCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e 
  Gh_D10G0959 209 DPEPERCRRTDGKKWRCSQDAVANQKYCERHINRGRHRSRKPVEG 253
                  79****************************************985 PP
2QLQ51.53.2e-18139175137
          QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  ++FT++Q+ +L++Q+l+yKy+ +n+ vP++Ll +++k
  Gh_D10G0959 139 GPFTPSQWIELEHQALIYKYITSNVAVPSNLLNPLKK 175
                  59******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.9E-9139175IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-12140173IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.044140175IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.236209253IPR014977WRC domain
PfamPF088796.8E-20210252IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDFGVPVLDG ILGPENGAPS QPQPKLERSE DHCKCSKLQR SGDLLTPKTR PLHQPSPLLR  60
SNSLVLADTG PHEHMLCFSS LNSEVPFINI KDGDFLEIST QNSGFSYCQP TPSSYTRNAG  120
YGSGSLSASM RGGFNGVRGP FTPSQWIELE HQALIYKYIT SNVAVPSNLL NPLKKALYPY  180
GFTSSPAGSL PPNSLGWGSF HLGYSGSTDP EPERCRRTDG KKWRCSQDAV ANQKYCERHI  240
NRGRHRSRKP VEGQTGHAAS GTTNPKVVPM SSSMLTSVIT GSGASSSLAI AQQHQFKNLQ  300
SGATHHSADA LVNRIQDPWA SSVMSSTTNL KSNNSMFMIT KQGVPFAEFS PSDFGHVAYD  360
SLVNLLHRSS IVESKDYGPY LDFTTDQETL DQNLLHQFFD DWPKDESNHS VITWPGELRS  420
DWTQLSMSIP MTSSEFSSSS SSPAQEKLAL SPLSLSREFD PIQMGSVVKN DISDF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.27420.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698732.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A1U8K8A00.0A0A1U8K8A0_GOSHI; growth-regulating factor 1-like
STRINGGorai.011G108400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-91growth-regulating factor 1