PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0914
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 530aa    MW: 59887.2 Da    PI: 8.4755
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0914genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.2e-161542461097
                  HHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  10 vlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  + ++     ++l +p++f + + +k+++   ++l d++g+sW  k+    ++ +r  + l +GW  Fv++++L++gD++ F+l++ +e +++v+++
  Gh_D10G0914 154 YVSHnpkhsCILGIPREFSRLF-LKQNG--NVVLCDSNGKSWAAKYATsLGSNQRpyVRLCNGWGAFVRDKNLQVGDVCAFELINCKEISFKVSIL 246
                  3333355569********9555.55444..6***************775444444558888*********************99756666677766 PP
2B351.22.2e-16298393295
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                  + v +++++ +++ l+++++fa++h ++  +s+++ l  ++g+sW  k+     +++++  +  GWk Fv++n+L+ gD++v+++ ++ ++ +++v 
  Gh_D10G0914 298 LVVVLRPSYIRTHALCISNHFARKHFESALTSVDVNLCLSNGKSWPAKYHQrsIGNPNGK-ICHGWKAFVNDNNLQPGDVCVLEMRNHdTKISFKVI 393
                  55566777777788***********888899******************44444555554.556********************6543244444444 PP
3B341.52.5e-134425251096
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  +lk++r  +p  f+e++ ++    ++ ++   + rsW vk+  + + ++  +t+GW eF+++n L+egD++v +ld  + + l+v +
  Gh_D10G0914 442 HLKEKRAGIPFGFVEQYLKPD---METVILKVEDRSWPVKIASNPQNRQARFTNGWIEFARENFLREGDICVYELDALNHGLLNVCI 525
                  56677899*********6553...4555566677*******99999999*************************9866777566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-9147IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-11153IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.377140IPR003340B3 DNA binding domain
CDDcd100173.21E-7138No hitNo description
Gene3DG3DSA:2.40.330.101.7E-21137247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-21140248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-19144247No hitNo description
SMARTSM010192.7E-12146249IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943150249IPR003340B3 DNA binding domain
PfamPF023625.2E-13160246IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-19291396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-20291396IPR015300DNA-binding pseudobarrel domain
CDDcd100175.93E-19296396No hitNo description
SMARTSM010198.8E-11297398IPR003340B3 DNA binding domain
PROSITE profilePS5086312.21297398IPR003340B3 DNA binding domain
PfamPF023623.5E-15297392IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-16427527IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-18427527IPR015300DNA-binding pseudobarrel domain
CDDcd100177.50E-16432527No hitNo description
SMARTSM010194.4E-10433529IPR003340B3 DNA binding domain
PROSITE profilePS5086312.872433529IPR003340B3 DNA binding domain
PfamPF023623.9E-11442525IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MWLQDGWQNF AEHYSVESGH FLVFRYEGHC HFHVIIFDRT ATEIEYPDVN DNEETQKQEV  60
KIKQESEDDE PISIMNEISH GLRQKPGLQC PRPHKTMKSE PMLSGFSAGT GRGEMESTTA  120
SKVTSDEKFM VLQRVASAFQ STNPFFLVLM QPTYVSHNPK HSCILGIPRE FSRLFLKQNG  180
NVVLCDSNGK SWAAKYATSL GSNQRPYVRL CNGWGAFVRD KNLQVGDVCA FELINCKEIS  240
FKVSILKGKK SGFHGRPPST DGYFSAKRER GTSYTQPLKA RETALEKALA FTSENPFLVV  300
VLRPSYIRTH ALCISNHFAR KHFESALTSV DVNLCLSNGK SWPAKYHQRS IGNPNGKICH  360
GWKAFVNDNN LQPGDVCVLE MRNHDTKISF KVIIFKTITD ANSHPLEGVS QKPLGLTSQS  420
LKAATEMTST PPFFRSVVLP LHLKEKRAGI PFGFVEQYLK PDMETVILKV EDRSWPVKIA  480
SNPQNRQARF TNGWIEFARE NFLREGDICV YELDALNHGL LNVCISKSDD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016700356.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A1U8KCX80.0A0A1U8KCX8_GOSHI; B3 domain-containing protein LOC_Os12g40080-like
STRINGGorai.011G103800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-24B3 family protein