PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G0557

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 496aa MW: 53952.5 Da PI: 8.9924

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G0557	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Gh_D10G0557 85 FVCEICNKGFQRDQNLQLHRRGH 107 89*******************88 PP
2	zf-C2H2	12.8	0.00037	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Gh_D10G0557 161 WKCDKCSKRYAVQSDWKAHSKTC 183 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.66E-7	84	107	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	84	107	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	85	107	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	85	107	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.9E-5	85	107	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2
SMART	SM00355	89	126	156	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.0E-4	149	182	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.66E-7	156	181	No hit	No description
SMART	SM00355	140	161	181	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MMKGYIVQQQ QQEVLEENMS NLTCASGEAS VSSAAGGTNY SQQYFSNPPA QAQPVKRKRN 60 QPGNPDPDAE VIALSPKTLM TTNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTSKE 120 VRKKVYVCPE VSCVHHDPSR ALGDLTGIKK HFYRKHGEKK WKCDKCSKRY AVQSDWKAHS 180 KTCGTKEYRC DCGTLFSRRD SFITHRAFCD ALAEESSRAA IMGANTFQPG SSHTNLQVTQ 240 FNPHDIQAFS LKQEQHQRFT PLKPDIPPWL AIQPMLGAGA GLSSSSSSIF SPSLTLHENP 300 TPIPTLDPTL PPYHPTTVLS PHMSATALLQ KAAQMGATLS NKPGSSSAPA TTTAMRPHQQ 360 THVSADFVGS TNNNSTTAGF GLNLSSREEV SMGSGFIHGS THHAAESSGA PPPPSLLLQG 420 MMNSLSSPIG FDSTSFDDIA FSGILNAKKK SGTLINESFS KTTAEPENGT GNNNDHESRA 480 GGSTQGEALR RDFLAL

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MMKGYIVQQQ QQEVLEENMS NLTCASGEAS VSSAAGGTNY SQQYFSNPPA QAQPVKRKRN  60
QPGNPDPDAE VIALSPKTLM TTNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTSKE  120
VRKKVYVCPE VSCVHHDPSR ALGDLTGIKK HFYRKHGEKK WKCDKCSKRY AVQSDWKAHS  180
KTCGTKEYRC DCGTLFSRRD SFITHRAFCD ALAEESSRAA IMGANTFQPG SSHTNLQVTQ  240
FNPHDIQAFS LKQEQHQRFT PLKPDIPPWL AIQPMLGAGA GLSSSSSSIF SPSLTLHENP  300
TPIPTLDPTL PPYHPTTVLS PHMSATALLQ KAAQMGATLS NKPGSSSAPA TTTAMRPHQQ  360
THVSADFVGS TNNNSTTAGF GLNLSSREEV SMGSGFIHGS THHAAESSGA PPPPSLLLQG  420
MMNSLSSPIG FDSTSFDDIA FSGILNAKKK SGTLINESFS KTTAEPENGT GNNNDHESRA  480
GGSTQGEALR RDFLAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-35	157	225	3	71	Zinc finger protein JACKDAW
5b3h_F	8e-35	157	225	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	123	KLKQRTSKEVRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.14288	0.0	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455825.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X1
Swissprot	Q8H1F5	1e-124	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2P5QP28	0.0	A0A2P5QP28_GOSBA; Uncharacterized protein
STRING	Gorai.011G064700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-116	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]