PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0319
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 403aa    MW: 45993.1 Da    PI: 4.9013
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0319genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.5e-35141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d+++++++sws++ +sfvv+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F kg+ +ll++i+
   Gh_D10G0319  14 FLAKTYEMVDDPSTDSIVSWSASDKSFVVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFIKGQPHLLKNIH 101
                   9********************999****************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Gh_D10G0319 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.53E-379103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-6510103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.3E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDDVQGSSSS LPPFLAKTYE MVDDPSTDSI VSWSASDKSF VVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFI KGQPHLLKNI HRRKPVHSHS MQSHLGQGAS  120
SLTESERQNL RDEIERLKNE KELLALELKR HEQERQGFQL QMWLLRERLQ NMERRQQIMM  180
SSVARVLQKP GVAINLTPQL ETNDRKRRLT RIAYLYDEAG IEDSQTGNSL ISRENVDSTS  240
LSNMEPFEQL ESSMVFWENA VHDFGQTNIQ HESNLELDES TSCAETPAIS CIQLNIDARL  300
KSPGIDMNSE PALIVVSEPI TAKEQAAGTT APATTGVNDI FWEQFLTENP GSTDTQEVQS  360
ERKDSDASKN ESKPGDHGKF WWNTKNVNNL AEQMGHLTPA ERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-25910324129Heat shock factor protein 1
5d5v_B8e-25910324129Heat shock factor protein 1
5d5v_D8e-25910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208DRKRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.193240.0boll
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674150.0KR067415.1 Gossypium hirsutum HSF34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730925.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_016730926.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494031e-136HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A1U8MVT30.0A0A1U8MVT3_GOSHI; heat stress transcription factor A-4a-like
STRINGGorai.011G036400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-129heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]