PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G2443

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 482aa MW: 54482.5 Da PI: 6.3641

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G2443	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.7	8.4e-25	116	217	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ +++++++ +++ Gh_D09G2443 116 KWTDSMVKLLIMAVYYIGDEGGSEGngsdptakkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKVVENQSLL 213 7************9999998643366788889999999******************************************55******** PP trihelix 83 dqle 86 d+++ Gh_D09G2443 214 DSMD 217 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.8E-22	114	242	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MDTSGVSGGV FSGIGSGMLG LEMPLHPQHH QHQQPPRNPQ TAPNLHHLQQ NPQMVGFPHQ 60 ETDHSLHQQS VKQGGYPFGS KAKQTSPLSD EDEHGFNPDD ASADAKRKGS PWQRMKWTDS 120 MVKLLIMAVY YIGDEGGSEG NGSDPTAKKK AGGLLQKKGK WKSVSRAMME KGFYVSPQQC 180 EDKFNDLNKR YKRVNDILGR GTACKVVENQ SLLDSMDLSP KMKEEVKKLL NSKHLFFREM 240 CAYHNSCGHV ATAGAHQSSV VATEISQTQH QQAQCLHSSE NAQIAGRIET EASKLAKVGS 300 EEEDDDEDED DEDEDDDEDD DDEAVDGHSR GQNGHGKEDD EDNNEKPSHK RPRKGAFSMS 360 PSPLMQQLSC EVVNVIQDGS KSAWEKKHWM KMRLVQLEEQ QVSYQYQAFQ LEKQRLKWVK 420 FSGKKEREME RAKLENERRR LENERMVLLV KQKELELVDV QQQHLSQQHS CSKRRDPSNI 480 SG

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MDTSGVSGGV FSGIGSGMLG LEMPLHPQHH QHQQPPRNPQ TAPNLHHLQQ NPQMVGFPHQ  60
ETDHSLHQQS VKQGGYPFGS KAKQTSPLSD EDEHGFNPDD ASADAKRKGS PWQRMKWTDS  120
MVKLLIMAVY YIGDEGGSEG NGSDPTAKKK AGGLLQKKGK WKSVSRAMME KGFYVSPQQC  180
EDKFNDLNKR YKRVNDILGR GTACKVVENQ SLLDSMDLSP KMKEEVKKLL NSKHLFFREM  240
CAYHNSCGHV ATAGAHQSSV VATEISQTQH QQAQCLHSSE NAQIAGRIET EASKLAKVGS  300
EEEDDDEDED DEDEDDDEDD DDEAVDGHSR GQNGHGKEDD EDNNEKPSHK RPRKGAFSMS  360
PSPLMQQLSC EVVNVIQDGS KSAWEKKHWM KMRLVQLEEQ QVSYQYQAFQ LEKQRLKWVK  420
FSGKKEREME RAKLENERRR LENERMVLLV KQKELELVDV QQQHLSQQHS CSKRRDPSNI  480
SG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.26201	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016691470.1	0.0	PREDICTED: myb-like protein V
Refseq	XP_016691471.1	0.0	PREDICTED: myb-like protein V
TrEMBL	A0A1U8JMG3	0.0	A0A1U8JMG3_GOSHI; myb-like protein V
STRING	Gorai.006G159000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6762	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-71	sequence-specific DNA binding transcription factors