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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G2383 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 523aa MW: 58340.8 Da PI: 6.4556 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 368.6 | 8.5e-113 | 142 | 522 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalklfsevsPil 91 lv+lL++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++La rla+ ++ + +++ + +n s+++ a++l +e++P + Gh_D09G2383 142 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPPGTAVGRVQLPPVMNimdimsdSDKKQEAFRLVYEICPHI 239 689****************************************************777766666777777777777888888999999********** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLa.sRp.egpp...slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 kf+h++aN aIlea+ege+ vH++D++++ qG QW L+q+La +R +g+p +lRiT+vg ++ +g+ L+ +A+++g+++efn+ Gh_D09G2383 240 KFGHFVANLAILEAFEGESLVHVVDLGMTlglpQGHQWRFLIQSLAaTRGgAGKPhctRLRITAVGL----CVDRFDVIGKDLKTYAKSMGINLEFNI 333 *************************98764444889**********5555744443568********....**************************9 PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 v+++le+l++e+++v+ +E+l+Vn++lqlh +++es + +vL+++ +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ Gh_D09G2383 334 -VESNLENLKPENIKVSDDEVLVVNSILQLHCVVKESRGALN---SVLQMIHELSPKLLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKY 427 .7********************************88877777...8**************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + r+k+E++++++ei+n+v+cega+r+erhe++ +Wr+r+++aGF++ pl+ ++qak l + k +gy+v e++g+lvlgW+ +p+v+vS+W+ Gh_D09G2383 428 DTRRAKMEQFYFAEEIKNIVSCEGADRVERHERVDQWRRRMSRAGFQATPLR--LMSQAKQWLGNNKvCEGYTVVEDKGCLVLGWNAKPIVAVSCWK 522 **************************************************95..89***********9****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.828 | 116 | 503 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-110 | 142 | 522 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MSHGFLPNEF QKSDKIDEVI GLDLTLSAMG MTFCSHRFMP LIVDNDDNNW SRRFFEEETR 60 DNKRLKRTIN GGNSDGGMSR NDSNGSLSSL SSLHFRDHIL TYSKRYLAAE AVEEAAAAAA 120 AMAAGYEENG IEEDETAYGM RLVQLLIACA EAVACRDKSH ASALLSELRA NALVFGSSFQ 180 RVASCFVQGL ADRLASVQPP GTAVGRVQLP PVMNIMDIMS DSDKKQEAFR LVYEICPHIK 240 FGHFVANLAI LEAFEGESLV HVVDLGMTLG LPQGHQWRFL IQSLAATRGG AGKPHCTRLR 300 ITAVGLCVDR FDVIGKDLKT YAKSMGINLE FNIVESNLEN LKPENIKVSD DEVLVVNSIL 360 QLHCVVKESR GALNSVLQMI HELSPKLLVL VEQDSSHNGP FFLGRFMEAL HYYSAIFDSL 420 DAMLPKYDTR RAKMEQFYFA EEIKNIVSCE GADRVERHER VDQWRRRMSR AGFQATPLRL 480 MSQAKQWLGN NKVCEGYTVV EDKGCLVLGW NAKPIVAVSC WKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-56 | 149 | 521 | 26 | 378 | Protein SCARECROW |
5b3h_A | 6e-56 | 149 | 521 | 25 | 377 | Protein SCARECROW |
5b3h_D | 6e-56 | 149 | 521 | 25 | 377 | Protein SCARECROW |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016718763.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1U8LZD0 | 0.0 | A0A1U8LZD0_GOSHI; DELLA protein RGL1-like | ||||
STRING | Gorai.006G270800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16018 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-77 | RGA-like 1 |