PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2383
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 523aa    MW: 58340.8 Da    PI: 6.4556
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2383genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.68.5e-1131425221374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalklfsevsPil 91 
                  lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La rla+ ++   +  +++  + +n       s+++  a++l +e++P +
  Gh_D09G2383 142 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPPGTAVGRVQLPPVMNimdimsdSDKKQEAFRLVYEICPHI 239
                  689****************************************************777766666777777777777888888999999********** PP

         GRAS  92 kfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLa.sRp.egpp...slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                  kf+h++aN aIlea+ege+ vH++D++++    qG QW  L+q+La +R  +g+p   +lRiT+vg       ++   +g+ L+ +A+++g+++efn+
  Gh_D09G2383 240 KFGHFVANLAILEAFEGESLVHVVDLGMTlglpQGHQWRFLIQSLAaTRGgAGKPhctRLRITAVGL----CVDRFDVIGKDLKTYAKSMGINLEFNI 333
                  *************************98764444889**********5555744443568********....**************************9 PP

         GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                   v+++le+l++e+++v+ +E+l+Vn++lqlh +++es    +   +vL+++ +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ 
  Gh_D09G2383 334 -VESNLENLKPENIKVSDDEVLVVNSILQLHCVVKESRGALN---SVLQMIHELSPKLLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKY 427
                  .7********************************88877777...8**************************************************** PP

         GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +  r+k+E++++++ei+n+v+cega+r+erhe++ +Wr+r+++aGF++ pl+   ++qak  l + k  +gy+v e++g+lvlgW+ +p+v+vS+W+
  Gh_D09G2383 428 DTRRAKMEQFYFAEEIKNIVSCEGADRVERHERVDQWRRRMSRAGFQATPLR--LMSQAKQWLGNNKvCEGYTVVEDKGCLVLGWNAKPIVAVSCWK 522
                  **************************************************95..89***********9****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.828116503IPR005202Transcription factor GRAS
PfamPF035143.0E-110142522IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MSHGFLPNEF QKSDKIDEVI GLDLTLSAMG MTFCSHRFMP LIVDNDDNNW SRRFFEEETR  60
DNKRLKRTIN GGNSDGGMSR NDSNGSLSSL SSLHFRDHIL TYSKRYLAAE AVEEAAAAAA  120
AMAAGYEENG IEEDETAYGM RLVQLLIACA EAVACRDKSH ASALLSELRA NALVFGSSFQ  180
RVASCFVQGL ADRLASVQPP GTAVGRVQLP PVMNIMDIMS DSDKKQEAFR LVYEICPHIK  240
FGHFVANLAI LEAFEGESLV HVVDLGMTLG LPQGHQWRFL IQSLAATRGG AGKPHCTRLR  300
ITAVGLCVDR FDVIGKDLKT YAKSMGINLE FNIVESNLEN LKPENIKVSD DEVLVVNSIL  360
QLHCVVKESR GALNSVLQMI HELSPKLLVL VEQDSSHNGP FFLGRFMEAL HYYSAIFDSL  420
DAMLPKYDTR RAKMEQFYFA EEIKNIVSCE GADRVERHER VDQWRRRMSR AGFQATPLRL  480
MSQAKQWLGN NKVCEGYTVV EDKGCLVLGW NAKPIVAVSC WKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5614952126378Protein SCARECROW
5b3h_A6e-5614952125377Protein SCARECROW
5b3h_D6e-5614952125377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016718763.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1U8LZD00.0A0A1U8LZD0_GOSHI; DELLA protein RGL1-like
STRINGGorai.006G270800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16018814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-77RGA-like 1