PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2368
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 514aa    MW: 56918.6 Da    PI: 9.4235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2368genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.31.1e-17256305255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r +h++ E+rRR++iN++f++Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  Gh_D09G2368 256 RSKHSATEQRRRSKINDRFQRLRGIIPNS----DQKRDKASFLLEVIEYIQFLQ 305
                  899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-23251327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-19253326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.952254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-14256309No hitNo description
PfamPF000103.4E-15256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-13260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MELPQSWPLG AEGRKPTHDF LSLYSHSSVL QDPRPPAQDG YRKTHDFLQL EALGKAIAKE  60
ETTAEEAMAE KPLPPPPPAP PPRSAEHVLP GGIGTYSISH ISSRAEGALF TVARRSISER  120
NDETSTAILI LEVVSLCGKN LQQRRERQGR RIPAKHRRNT GCERSSGEGE AMGHIIVGET  180
IAIIINKQPP QQFQLSLFIS QKSFMEMMKS AQYNDFEEDE DFILKKESST TTRSKGELRV  240
KVDGKSAANQ KANTSRSKHS ATEQRRRSKI NDRFQRLRGI IPNSDQKRDK ASFLLEVIEY  300
IQFLQEKVHK HERAYQGWNH EPSKLMPWRN NETPAENHAD QSRAINSMST PSALVFSVAP  360
NIPGTAMNPV DSDMSTATTL RPVDLGPAMM NKTVPFAVSP QPNSITSAQS TPLLPSDAET  420
NGALPIKKLK EQELTVEGGT ISISSVYSQG HLEWTCHMLA SRCKLSLGSN LVLVILLQLP  480
HLKGKEIPST IQGATHLSVG FVDDSDRPIK KLKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.131611e-169boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487598.10.0PREDICTED: transcription factor BIM1-like isoform X1
TrEMBLA0A0D2S2Z80.0A0A0D2S2Z8_GOSRA; Uncharacterized protein
STRINGGorai.006G269200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.43e-67bHLH family protein