PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2278
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 672aa    MW: 74092.4 Da    PI: 6.385
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2278genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.19.8e-29214267155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv av+qL G+ekA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Gh_D09G2278 214 KPRVVWSVELHQQFVAAVNQL-GIEKAVPKKILELMNVPGLTRENVASHLQKYRL 267
                  79*******************.********************************8 PP
2Response_reg78.23e-26361441109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+  +y +v+ +  +e al +l+e++  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a + ++ + + +  Ga 
   Gh_D09G2278  36 VLLVDDDPTCLMILEKMLKACQY-NVTKCNRAETALSMLRENRngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKNVVMKGVTHGAC 130
                   89*********************.***************99999***********************6654.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
   Gh_D09G2278 131 DYLIKPVRIEALKN 144
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.1E-18010663IPR017053Response regulator B-type, plant
SuperFamilySSF521725.98E-3633157IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.3E-4233176No hitNo description
SMARTSM004483.9E-3034146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.93135150IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2336144IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.71E-2637149No hitNo description
SuperFamilySSF466897.53E-20211271IPR009057Homeodomain-like
PROSITE profilePS5129410.62211270IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-30213272IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24214267IPR006447Myb domain, plants
PfamPF002491.6E-7216266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MNSSSGKSYM STASSSVLWK AGGDVVADQF PAGLRVLLVD DDPTCLMILE KMLKACQYNV  60
TKCNRAETAL SMLRENRNGF DIVISDVHMP DMDGFKLLEH IGLEMDLPVI MMSADDGKNV  120
VMKGVTHGAC DYLIKPVRIE ALKNIWQHVV RKRKNEWKDF EQSGSVEEGD RQPKQSEDAD  180
YSSSANEGNW KSSKRRKDDE DENDERDDTS TLKKPRVVWS VELHQQFVAA VNQLGIEKAV  240
PKKILELMNV PGLTRENVAS HLQKYRLYLR RLSGVSQHPS NLNNSFMNPQ DATFGPLDLQ  300
ALAATGQLPA QSLATLQAAG LGRSTAKSGI PMPLIDQRNI FSFENPKLRF GEAQQQHVSN  360
NKQTNLLHGI PTTMEPKQLA GLHHTAQSMG NMNMPVLSHG SQSSQNNPLL MQMAQPQARG  420
QMLNDSTVGL APRLLSPRGQ SMLSNGMATN VSTRNGVPEN IRAPSYNPVS QTSLMLNFPM  480
NHTSELPGNS FPLVSTPGIS SLAPKVAFQE DVNSEIKGSV GFMPSYDIFN DLNQHKPQNW  540
ELQNVGMMFN SSQHSNSLQG NLDHTQSILV QQGFLSGQNR NSTVISKAMF SAGDSTGHVN  600
AQNSNQHLNS LLDNTVRVKS ERVADTAPAN LYPDHFGQED LMSALLKQQD IIAPAENNDF  660
DFDGYSIDNI PV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-22213273464ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.197480.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016712856.10.0PREDICTED: two-component response regulator ARR2-like
RefseqXP_016712857.10.0PREDICTED: two-component response regulator ARR2-like
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A1U8LE150.0A0A1U8LE15_GOSHI; Two-component response regulator
STRINGGorai.006G259700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24032773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.20.0response regulator 1
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]