PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2269
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 314aa    MW: 36132.4 Da    PI: 9.7256
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2269genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS22.71.1e-072269115164
         GRAS 115 iDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetger 164
                  iD+ i   +Q ++L+qaLa+R+++p  +l+iT++g    + ++++e+tg++
  Gh_D09G2269  22 IDLAIRSRAQGISLMQALATRENPPIeRLKITAIGT---TLRTKMEQTGKK 69 
                  9*********************99877********9...457777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.7E-52269IPR005202Transcription factor GRAS
Gene3DG3DSA:1.20.910.105.3E-5097311IPR016084Haem oxygenase-like, multi-helical
PfamPF030702.1E-41104311IPR004305Thiaminase-2/PQQC
SuperFamilySSF486131.93E-53113311IPR016084Haem oxygenase-like, multi-helical
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MKHSLPVYKR SLKAFRARKK SIDLAIRSRA QGISLMQALA TRENPPIERL KITAIGTTLR  60
TKMEQTGKKP AFKTQFKKQQ FCRNWLHSGI QMQAKITVTE TWLRKHRHLY DGATRHPFIR  120
SIRDGNIDIS AFKTWLGQDY IFVRAFVPFV ASVLTKAYKG SDDGNGDVEV ILGGVAALHD  180
EISWFKKEAF KWGVQLSSIV PQKANQEYCR FLESLISPEV EYTVAAVAFW AIETIYQESF  240
AHCLEDDSKT PPELKETCQR WGNESFGEYC NSLRNIVDRQ LEKASDDVIT KAEATLLRVL  300
EHEVDFWNMS HRRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2f2g_A3e-96953103217SEED MATURATION PROTEIN PM36 HOMOLOG
2f2g_B3e-96953103217SEED MATURATION PROTEIN PM36 HOMOLOG
2q4x_A3e-96953103217Seed maturation protein PM36 homolog
2q4x_B3e-96953103217Seed maturation protein PM36 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.211370.0boll
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in thiamine salvage. {ECO:0000250|UniProtKB:Q9ASY9}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487439.10.0PREDICTED: probable bifunctional TENA-E protein
SwissprotQ9SWB61e-117TENAE_SOYBN; Probable bifunctional TENA-E protein
TrEMBLA0A2P5W0X60.0A0A2P5W0X6_GOSBA; Uncharacterized protein
STRINGGorai.006G258900.11e-166(Gossypium raimondii)
Publications ? help Back to Top
  1. Schmutz J, et al.
    Genome sequence of the palaeopolyploid soybean.
    Nature, 2010. 463(7278): p. 178-83
    [PMID:20075913]