PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1953
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 291aa    MW: 32323.2 Da    PI: 7.8189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1953genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19142191356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  ++GVr+++ +g+WvAeIr p++   r+r++lg+f+tae Aa a++ a+  l+ge
  Gh_D09G1953 142 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEAAAMAYDTAAYILRGE 191
                  8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.48E-22140200No hitNo description
SuperFamilySSF541712.35E-22141199IPR016177DNA-binding domain
SMARTSM003801.9E-35141204IPR001471AP2/ERF domain
PROSITE profilePS5103222.655141198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-31141199IPR001471AP2/ERF domain
PRINTSPR003671.1E-10142153IPR001471AP2/ERF domain
PfamPF008472.1E-12142191IPR001471AP2/ERF domain
PRINTSPR003671.1E-10164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MATTGSTFFN NPIIWASSSS EETPGSNLLK NVPGFINQDI NHGFNPINQA QPSPSMATTM  60
SQFPDLTSLF GPSKRVIDPI NENPPLQTPQ QWLRINQSFT NDQSKGFSDY WLSTTKTHPM  120
KYSGRRFQNQ HQKGYSSPGK LFRGVRQRHW GKWVAEIRLP RNRTRVWLGT FDTAEAAAMA  180
YDTAAYILRG EYAQLNFPDL KDQVMANSLN GNTAAILEAK LQAISQGSTV NKKSDLDTTT  240
TMPAEEGVSG LNRNTTKNME ALSSDVDGVQ LSRLPSLDMD IIWDALLVSD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-20137198163ATERF1
3gcc_A8e-20137198163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147881e-94JX614788.1 Gossypium hirsutum clone NBRI_GE58430 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670429.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
SwissprotQ9SVQ06e-68ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A1U8I3Z50.0A0A1U8I3Z5_GOSHI; ethylene-responsive transcription factor ERF062-like
STRINGGorai.006G222600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.15e-58ERF family protein