PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1892
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 274aa    MW: 29614.7 Da    PI: 6.5035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1892genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000237698123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Gh_D09G1892 76 YSCSFCRREFRSAQALGGHMNVH 98
                 99*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-673103No hitNo description
PROSITE profilePS5015711.07476103IPR007087Zinc finger, C2H2
SMARTSM003550.00987698IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-576100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAAELDLLSL TQLQKLAQSQ QNHNHHQLDT NLATVGSLMW YPKGQSHEVD DDSWEVRAFA  60
EDTGNVMGTT WPPRSYSCSF CRREFRSAQA LGGHMNVHHR DRARLHQAHP AAAAGGNGAL  120
NNPTSPSSPS TTSSSTLLIP TQEFVTNGGL CLLYQLHNPS DGVLTSSPPM DAWPIDSSST  180
LLSVSPYPSY NLMAVTAATQ SPINFPATPP VLNSSSSSSS SSSSSFCYST KAVHSRTRGD  240
NNNLNEGLNI SNKEIPLEEL DLELRLGHKR PTTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-137198229superman protein
2l1o_A4e-137198229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3935261e-139GQ393526.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0491 SSR marker CGR5518 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670617.10.0PREDICTED: uncharacterized protein LOC107890616
TrEMBLA0A1U8HX700.0A0A1U8HX70_GOSHI; uncharacterized protein LOC107890616
STRINGGorai.006G216400.11e-169(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.17e-32C2H2 family protein