PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G1495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 167aa MW: 18745.7 Da PI: 9.8549 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H r+H Gh_D09G1495 87 HECSICGQEFSMGQALGGHRRRH 109 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.3E-11 | 38 | 63 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.35E-8 | 38 | 109 | No hit | No description |
SMART | SM00355 | 1.1 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.536 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.7E-11 | 86 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.55 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MKRERESVEI QGFDIAKSLM LLSQGLQTKP KEHSVSEVFE CKTCHRCFPS FQALGGHRAS 60 HKRPKLMGDK PNETTQFLSL STKPKTHECS ICGQEFSMGQ ALGGHRRRHR AAMNESFSPF 120 PLVPTVPVLK RSNSSRRVVC LDLNLTPLEN DLQVLFGNKA PKVDLCI |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016673384.1 | 1e-119 | PREDICTED: zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 3e-49 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A2P5PVP8 | 1e-119 | A0A2P5PVP8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G176000.1 | 1e-118 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 2e-43 | C2H2 family protein |