PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1176
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 420aa    MW: 47323.3 Da    PI: 4.7173
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1176genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.7e-1593144155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++  ++W A+I       k  k ++lg+f+t+eeAa+a++ a+ +l+g
  Gh_D09G1176  93 SIYRGVSRNSDFKKWQARIGKG----KDiKGIYLGTFDTEEEAARAYDVAAIRLKG 144
                  57****************9983....247************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.047158IPR001471AP2/ERF domain
CDDcd000189.76E-11260No hitNo description
SMARTSM003802.3E-5264IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-7360IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-6359IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1793153IPR016177DNA-binding domain
PfamPF008475.5E-1093144IPR001471AP2/ERF domain
CDDcd000186.87E-2193154No hitNo description
SMARTSM003803.3E-2194158IPR001471AP2/ERF domain
PROSITE profilePS5103217.43894152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-1894152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MTRRYTGRYE AFLWDNTDPT FLKLGGFAGG YDDEVSAARP YDLAALKLWG ELAPLNFPIS  60
NYESDLVEMK LYTKHEYFRN IRRKSRGFSK GVSIYRGVSR NSDFKKWQAR IGKGKDIKGI  120
YLGTFDTEEE AARAYDVAAI RLKGANAITN FDINEYDLND ILQSSKLPIG KGASKLLQKS  180
SIEDVIRKKR CVSDRNSLVY DEEDDSCTPN SNPDMNRIIS SSLLFGFQNP DEFQASPTQI  240
QCFNSFGNYM STDGNPSFNF NVEYPFNVNS DGNFTISGAA ENYFGEMQPF EFSHNLSALE  300
KLHQSSTFPF LHPYHQNPVE FPENLASNSL GNCVGTNREF IGSLQGLLTL QGQDSLKYLD  360
QPEDVTTQNL PQNPINFQTN RVPVYPWSSS YNAEASSYGI FKEVPSTKEN ENDSTGGNDE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485582.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2S3680.0A0A0D2S368_GOSRA; Uncharacterized protein
STRINGGorai.006G139300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17569610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-63AP2 family protein