PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_D09G1107

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 334aa MW: 38493.9 Da PI: 9.1964

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1107	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.9	2.4e-17	17	66	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien+ r ++fskRr gi KK ELS+LC+ e++ iifs++gk y ++ Gh_D09G1107 17 KIIENEDDRLISFSKRRFGIYKKICELSTLCGCEILFIIFSPKGKPYSFA 66 579******************************************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.4E-24	9	68	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.212	9	69	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.96E-30	10	85	No hit	No description
SuperFamily	SSF55455	2.09E-23	10	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-16	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.6E-20	19	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-16	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-16	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MASSSKKTRG KQKIEIKIIE NEDDRLISFS KRRFGIYKKI CELSTLCGCE ILFIIFSPKG 60 KPYSFAHPSI EAVTKRFLNP HQPLHETTDA PIETYRKVRI KSLVQDYNEV HDQLDASKEK 120 QKAFSLAQQS RGSESHHWWK TPIYQLNPRE LHEQDKRFAE FINLVSVARD KKIASISSMH 180 AAMDEDVPFV VPPRCGPSLH EILFIIFSPK GKPYSFAHPS IEVVTKCFLN PNQPLHETTN 240 ALVEAYRKPY SFAHPSIEAV TKRFLNPHQP LYETTDALVE AYRKPYSFAH PSTEFLTKRF 300 LNPNQPLHET TDAPVEAYRK ENEKDKSPNT NIQT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016673104.1	1e-146	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2Q9A1	1e-177	A0A0D2Q9A1_GOSRA; Uncharacterized protein
STRING	Gorai.006G132000.1	1e-177	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	1e-28	AGAMOUS-like 57