PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1014
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 386aa    MW: 43798.6 Da    PI: 8.8111
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1014genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.85.4e-154698155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 ++ +hn+ Er RR+ +Ns f+ Lr+llP a   + kK+s  +++ +Av+YI +Lq
  Gh_D09G1014 46 KKLNHNASERHRRKTVNSLFSSLRSLLPLA--DQMKKVSIPATVSEAVKYIPELQ 98
                 6789*************************6..49999***************998 PP
2HLH46.85.4e-15227279155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ +hn+ Er RR+ +Ns f+ Lr+llP a   + kK+s  +++ +Av+YI +Lq
  Gh_D09G1014 227 KKLNHNASERHRRKTVNSLFSSLRSLLPLA--DQMKKVSIPATVSEAVKYIPELQ 279
                  6789*************************6..49999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8114597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1346112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-1646116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-124698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-1151103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.811226278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13227293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-16227297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-12227279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-11232284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MCALAPFPTP NWPLLNPIGH QLNYIYENNE TLDSVPQASF DPCVVKKLNH NASERHRRKT  60
VNSLFSSLRS LLPLADQMKK VSIPATVSEA VKYIPELQEQ VERLVHKKEE LLLRISQQGG  120
IKLCSDGRCS SSATVSINRL TSDSEVIQIT LRKDRVQKTQ LSEILHILEE QQGLILLNAT  180
SFESFGGMIF YNIHLQVAPK TNYQLRESDI EALRGKLLAL FDPCVVKKLN HNASERHRRK  240
TVNSLFSSLR SLLPLADQMK KVSIPATVSE AVKYIPELQE QVERLVHKKE ELLLRISQQG  300
GIKLCSDGRC SSSATVSINR LTSDSEVIQI TLRKDRVQKT QLSEILHILE EQQGLILLNA  360
TSFESFGGMI FYNIHLQVHI YIYIYF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5827965e-76JX582796.1 Gossypium hirsutum clone NBRI_GE15694 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016673409.11e-149PREDICTED: transcription factor ORG2-like
TrEMBLA0A1U8ICA11e-148A0A1U8ICA1_GOSHI; transcription factor ORG2-like
STRINGGorai.006G120300.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-37bHLH family protein