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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_D09G0901 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
C2H2 |
| Protein Properties |
Length: 285aa MW: 30346 Da PI: 4.7694 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D09G0901 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.8 | 4.1e-05 | 259 | 282 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
++C+ C+ksF + L++H + H
Gh_D09G0901 259 FSCGSCSKSFGSEGGLESHKKAkH 282
89*****************99877 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MEFWGIEVKA GQPIKTDPGA SHVIHLSQAT LGESKNKAES VPLYVNVNGK KLVLGTLSHQ 60
NCPQLCFDLV FEQGFELSHN WKNGSVYFLG YKAFVPEEGY PFINSEEESS EDEELPVAAE 120
NGKAKTDAKT AKANAGKPDA VKQAVKIAEP SNNKKNEDDD DDSDSEDGSG SDDEDDSEDE 180
DEEMSVDESS DEDEETPKKV ESSKKRPAEA ATPVSAKKAK PAATPQKTDG KKGGHTATPH 240
PSKQAGKTSG KSPKSGGQFS CGSCSKSFGS EGGLESHKKA KHGGK
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during fertilization, while it is repressed during seed development. {ECO:0000269|PubMed:15082924}. |
| Uniprot | TISSUE SPECIFICITY: Predominantly expressed in ovaries. Accumulates predominantly in the micropylar region of the ovule's integument. {ECO:0000269|PubMed:15082924}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
