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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G0796 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 357aa MW: 41704.1 Da PI: 4.8768 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52.6 | 1.2e-16 | 148 | 234 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 Wt+ e+ +L++a ++ + +r++l++ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k++ + ts+s s+++yf++++ Gh_D09G0796 148 WTEGETFVLLDAWGDRFLQRKRKSLRAEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMVAETgTSTSNSKWVYFKKMD 234 *************************************762678***********************9888779*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 110 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.2E-22 | 147 | 236 | No hit | No description |
PROSITE profile | PS50090 | 6.121 | 148 | 205 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 173 | 212 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MDEIEDVRYH SNLYGDNQQQ GYRSSSSGKL PVRDVSCSRL NGNRYVDGNE DEEEDDEDLS 60 EEDENHCKIN GDQYVRNYDD GYDNKLYDDD EGSNQKNDDV DSRRHPKKRK LKDLVSSYEF 120 VRRVPAPEVA STSVPKPSCG GRNPLTDWTE GETFVLLDAW GDRFLQRKRK SLRAEEWQEV 180 AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK EKAMVAETGT STSNSKWVYF KKMDMLMSSS 240 PQQGVIHKAI SGEMRDSPTI SESTDSEEDV SEGLPPKKRR LERQRDDDSW FKLLADSIWK 300 FSNVYEKIEN SKRVQMLELE NMRMEFHREL EMQKRQILKK LQAEIVKMQE EDNASSE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 170 | QRKRKS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016672054.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A1U8I8F3 | 0.0 | A0A1U8I8F3_GOSHI; trihelix transcription factor ASIL2-like | ||||
STRING | Gorai.006G098600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24952 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 1e-45 | Trihelix family protein |