PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G0781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 26845.7 Da PI: 4.7718 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 62 | 109 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 ykGVr ++ +g+Wv+eIr p++ + r++lg+f tae+Aa+a++ a + + Gh_D09G0781 62 IYKGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFRTAEMAARAHDVASLTI 109 69****998.**********843...6*******************997765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.9E-11 | 61 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.24E-31 | 61 | 121 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-21 | 62 | 120 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-31 | 62 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.115 | 62 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-33 | 62 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAESNHCSSS EAESSITNNN SSSSSLRKPN NPSAVEVAAT SMIIDQGKKR PRPRDSSTKH 60 PIYKGVRMRS WGKWVSEIRQ PRKKSRIWLG TFRTAEMAAR AHDVASLTIK GDSATLNFPD 120 LAELLPRPVS LLPRDIQAAA VKAASMVNLN RPSPSSSSSS SLSESSEEPE ELSEIVELPN 180 IEGNLDSLFD SGNEFVLIDS VDVWVYDPSQ DFNGGFYDQT WDVTENFKLN SGSFETFSSE 240 NNLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-18 | 44 | 119 | 1 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 52 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ393553 | 1e-132 | GQ393553.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0518 SSR marker CGR5551 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016673435.1 | 1e-177 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 2e-55 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A1U8I5B8 | 1e-176 | A0A1U8I5B8_GOSHI; ethylene-responsive transcription factor TINY-like | ||||
STRING | Gorai.006G097000.1 | 1e-142 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 1e-52 | ERF family protein |
Publications ? help Back to Top | |||
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