PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G0744

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 401aa MW: 42591.9 Da PI: 6.6686

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G0744	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	18	39	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k+Fs++ L H+r H Gh_D09G0744 18 TCFYCNKVFSSHRALGGHLRIH 39 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.224	17	39	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	19	39	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MNFLLPRDDS EEHAGTKTCF YCNKVFSSHR ALGGHLRIHQ DGSILRALNY PGGSSSSVNN 60 TGNPPASLPN SQLNSFASFN SLSAITSNSV NNSGNPPASL PNSQPNSSSS FNSPTQFSTS 120 SVNNSGNSPA SLPNNQLNST AFNSLTLLPA AHLACDFSWM IYLNETNQVS RSQFIGGYSG 180 VPLIPVILSP DFSYGYSYGA TYHHNSLASR AFAPVGSNVD FPYVCSSCAA YYHNILASRA 240 FVPVGMIAAM PSAAFALFGS VVAPGFLVDS SLFLGSNGVR QFNTNEFQVS QVTLSPSFGN 300 ALPNVQAQNA GPPSAGSANV GRSERRSSGK RSREADRSRN AETSNASRRP RIAPNEHVEP 360 ENCPKKELQL FVDVVVPSSS SEASSSAEEE DLVDMDLSLH L

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MNFLLPRDDS EEHAGTKTCF YCNKVFSSHR ALGGHLRIHQ DGSILRALNY PGGSSSSVNN  60
TGNPPASLPN SQLNSFASFN SLSAITSNSV NNSGNPPASL PNSQPNSSSS FNSPTQFSTS  120
SVNNSGNSPA SLPNNQLNST AFNSLTLLPA AHLACDFSWM IYLNETNQVS RSQFIGGYSG  180
VPLIPVILSP DFSYGYSYGA TYHHNSLASR AFAPVGSNVD FPYVCSSCAA YYHNILASRA  240
FVPVGMIAAM PSAAFALFGS VVAPGFLVDS SLFLGSNGVR QFNTNEFQVS QVTLSPSFGN  300
ALPNVQAQNA GPPSAGSANV GRSERRSSGK RSREADRSRN AETSNASRRP RIAPNEHVEP  360
ENCPKKELQL FVDVVVPSSS SEASSSAEEE DLVDMDLSLH L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608664.1	1e-106	PREDICTED: uncharacterized protein LOC108454644
TrEMBL	A0A0D2SUI4	0.0	A0A0D2SUI4_GOSRA; Uncharacterized protein
STRING	Gorai.006G092500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24781	3	4