PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0708
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 551aa    MW: 63196.4 Da    PI: 7.0148
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0708genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.2e-18326422296
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  +k+l++sdv+++gr+vlpk+ ae +   ++ +e+++++++d  s+  W++k+++  ++ks++yvl+ ++ +Fvk+ngL +gD+++++  ++++++l++
  Gh_D09G0708 326 KKELKNSDVGSLGRIVLPKRDAEVNlpPLSDKEGIQVMIKDvYSNHMWTLKYKFwsNNKSRMYVLE-NTGDFVKQNGLGTGDSLTLY--EDESKNLYF 420
                  6899******************999**555568899*****77889******99888888889999.********************..568888888 PP

                  EE CS
           B3  95 kv 96 
                  ++
  Gh_D09G0708 421 SI 422
                  87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-23322424IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20325422IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-21325426IPR003340B3 DNA binding domain
CDDcd100171.17E-20325424No hitNo description
PROSITE profilePS5086310.221325426IPR003340B3 DNA binding domain
PfamPF023623.7E-15327423IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MHGVLCRISP RLGPHLNQRW RQHYLKHTHW SDGYPETTFL RPLVSQPTTP LAISRYLTLV  60
VSLLSLYLQF HGLFLSPQPI PLHHLTRFSR FFHTWTHPNG SILQPHDLIE PHFVLTQNSK  120
EEHTQSSALS STFFSDRNQH CNPLDSSSSH CTFVLMENSY IPFFSTTATS STTPITTTTT  180
IHSSSNMDWS QNSDFSMFEP MNSQFQHPSQ LLSPNQSLQF PYNHSIEQAP VYPFFTGQKG  240
FEFGVRKEQE RRTNDPYRTK LARINRKLAR QRSLQRNANS GASTQVDARR LINSGADTDT  300
NKNKDNKKDQ YRFCTPDNQR LRVVLKKELK NSDVGSLGRI VLPKRDAEVN LPPLSDKEGI  360
QVMIKDVYSN HMWTLKYKFW SNNKSRMYVL ENTGDFVKQN GLGTGDSLTL YEDESKNLYF  420
SITKVATVAV ESSSNQQYYH NVNNNGEEGN DNSNNIGNIY LPFTSQSKDD EATSLELFME  480
QQEPNDFIMT LPMDSTYGSH TMFPEETRHL PNNVGQTTSL SRSVDDISIN FDDCYGGLDM  540
LPEVNQYNFS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-503154223110B3 domain-containing transcription factor LEC2
6j9c_D3e-503154223110B3 domain-containing transcription factor LEC2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841650.0JX584165.1 Gossypium hirsutum clone NBRI_GE17392 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484717.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
RefseqXP_012484718.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
RefseqXP_012484719.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
RefseqXP_012484720.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
RefseqXP_012484721.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
RefseqXP_012484722.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
TrEMBLA0A0D2RSI00.0A0A0D2RSI0_GOSRA; Uncharacterized protein
STRINGGorai.006G087600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-54B3 family protein