PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G0385

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 465aa MW: 51013 Da PI: 4.5329

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G0385	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	199.2	2.4e-61	287	463	1	178
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilkfsh 95 lv+lLl+cAeav+++d a++++ +l+ ++p gd+mqR+a++fteAL+arla ++++++++ +p + ++ns e+l+++++ ++++P++kf+h Gh_D09G0385 287 LVHLLLACAEAVAKEDYLSARKYIHHLNRVVTPLGDSMQRVASCFTEALSARLAAtmtTSPSTSSSPKPYSPFPSNSLEVLKIYQIVYQACPYIKFAH 384 68*************************************************99522234555555555666678****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ s e+++etg+ L+++A++l++pfe Gh_D09G0385 385 FTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPSGAPFLRITGVGP----SIEAIKETGRCLTELAHSLHIPFEX 463 **************************************************....9********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.908	261	465	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.4E-59	287	463	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MSMINSLCGS MGSIKSENSC ESLVEPKKIA PPSCDMEQNS LTPPSLNFPA VKFELDGDVE 60 VQSPDSSIWE TFFSDHFDAD FMVSSPVRNL PSPQVSSYNF NNVMSMQGQS ILGCSPPPFS 120 PQLGSYSSSS GNKGKGQSPL HRVFNSPNDQ FMQVESLSLP AIEEFLDDGY EDQYQTTKIS 180 GIGTSNNMFE MPTTGPSMLD CISMPNSSTF CGSASETTSS QLDQEQHYQL NCVSRAPLSQ 240 QLQQEKQQEK QISAAAAEQQ QHQNLGHTLM VPIPIGPEQE QDSGLQLVHL LLACAEAVAK 300 EDYLSARKYI HHLNRVVTPL GDSMQRVASC FTEALSARLA ATMTTSPSTS SSPKPYSPFP 360 SNSLEVLKIY QIVYQACPYI KFAHFTANQA IFEAFETEER VHVIDLDILQ GYQWPAFMQA 420 LAARPSGAPF LRITGVGPSI EAIKETGRCL TELAHSLHIP FEXET

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MSMINSLCGS MGSIKSENSC ESLVEPKKIA PPSCDMEQNS LTPPSLNFPA VKFELDGDVE  60
VQSPDSSIWE TFFSDHFDAD FMVSSPVRNL PSPQVSSYNF NNVMSMQGQS ILGCSPPPFS  120
PQLGSYSSSS GNKGKGQSPL HRVFNSPNDQ FMQVESLSLP AIEEFLDDGY EDQYQTTKIS  180
GIGTSNNMFE MPTTGPSMLD CISMPNSSTF CGSASETTSS QLDQEQHYQL NCVSRAPLSQ  240
QLQQEKQQEK QISAAAAEQQ QHQNLGHTLM VPIPIGPEQE QDSGLQLVHL LLACAEAVAK  300
EDYLSARKYI HHLNRVVTPL GDSMQRVASC FTEALSARLA ATMTTSPSTS SSPKPYSPFP  360
SNSLEVLKIY QIVYQACPYI KFAHFTANQA IFEAFETEER VHVIDLDILQ GYQWPAFMQA  420
LAARPSGAPF LRITGVGPSI EAIKETGRCL TELAHSLHIP FEXET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-41	294	462	26	191	Protein SCARECROW
5b3h_A	5e-41	294	462	25	190	Protein SCARECROW
5b3h_D	5e-41	294	462	25	190	Protein SCARECROW
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21007	0.0	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578473	1e-145	JX578473.1 Gossypium hirsutum clone NBRI_GE10507 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484004.1	0.0	PREDICTED: DELLA protein RGL1-like
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A0D2SS29	0.0	A0A0D2SS29_GOSRA; Uncharacterized protein
STRING	Gorai.006G044300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16510	10	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	9e-40	GRAS family protein

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]