PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G2596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 361aa MW: 40155.8 Da PI: 7.1468 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.7 | 9.3e-09 | 125 | 145 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G+Ck Gd+C FaHg Gh_D08G2596 125 ACPDFRK-GICKKGDSCEFAHG 145 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.437 | 72 | 109 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-6 | 120 | 146 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-5 | 120 | 149 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.479 | 121 | 147 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-7 | 125 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 125 | 147 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 13 | 155 | 178 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.615 | 155 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MMIGEPTRPN PTVKIPAWDP LNDPTSNYSS VNYNCNAPSS PCPVDYLSSL HRYLPSNDFE 60 SSDSLSEDSD FPVDAFSCDH FRMYEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKFH 120 YSGTACPDFR KGICKKGDSC EFAHGVFECW LHPARYRTQP CKDGTSCKRR VCFFAHTPEQ 180 LRLLPQQSPR GNGSSSGDLD YVGSPIRHRF DIVSSPTSIL ASPPLSPPSD SPPLSPSGSF 240 YSVSELAASM RSMQLGKSKM NGAGACSWGM QMGSGYGSLR GSTLRPGFCR SPSTPTRSGL 300 GQFDLWECNN GFEEEPAMER VESGRDLRAR MYAKLSKENS LDGLDPTEPD PDLDWVSELV 360 K |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2781 | 0.0 | boll| embryo| leaf| ovule| root| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ526318 | 0.0 | HQ526318.1 Gossypium herbaceum clone NBRI_D2_431 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016720467.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 23-like | ||||
Swissprot | O82199 | 1e-117 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A2P5VQ57 | 0.0 | A0A2P5VQ57_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G288300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1249 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-115 | C3H family protein |
Publications ? help Back to Top | |||
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