PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 232aa MW: 25729.5 Da PI: 5.1468

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2565	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	3.8e-16	47	97	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kG r +k +g+Wv+eIr p++ r r++lg+++tae+Aa+a +aa +l+g Gh_D08G2565 47 SRFKGARKRK-WGKWVSEIRLPNS---RERIWLGSYDTAEQAARAFDAALFCLRG 97 6899999998.********933...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.05E-19	47	106	IPR016177	DNA-binding domain
Pfam	PF00847	6.3E-9	47	97	IPR001471	AP2/ERF domain
CDD	cd00018	6.59E-28	47	107	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.8E-28	48	106	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.799	48	105	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-30	48	111	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.7E-9	49	60	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.7E-9	71	87	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MACHVAFPIT ALRLRKSKSY APHLCLTEHS PVKQNTGRKP ESERPDSRFK GARKRKWGKW 60 VSEIRLPNSR ERIWLGSYDT AEQAARAFDA ALFCLRGRSA KFNFPDNPPD IAGGGSLTHA 120 EIQAVAARFA NSAPPRTHAE EQSTSGFQTE SPSPSVSVET VRVDGELPVD DGSFLDDLTM 180 GSGHYDSGYG LFPEFDDFSS DFTGLLSVPN IDCEEDDNLA WNLNSEPFLW NF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-14	47	105	13	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00151	DAP	Transfer from AT1G19210	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582906	5e-32	JX582906.1 Gossypium hirsutum clone NBRI_GE15829 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016720476.1	1e-148	PREDICTED: ethylene-responsive transcription factor ERF017-like, partial
Swissprot	Q84QC2	7e-56	ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBL	A0A0D2S7F5	1e-170	A0A0D2S7F5_GOSRA; Uncharacterized protein
STRING	Gorai.004G285200.1	1e-171	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1614	28	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	2e-55	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Li SJ, et al. The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4. Sci Rep, 2016. 6: p. 20151 [PMID:26837571] Yin XR, et al. Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening. Plant J., 2016. 86(5): p. 403-12 [PMID:27037684]