PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 327aa MW: 36647.7 Da PI: 6.1729

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2512	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.4	1.5e-35	13	104	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+y++++d+++++li+w +++nsf+v+d+ +f++k+Lp yFkhsnf+SFvRQLn+YgF+kv++++ weF++++F +g+k+ll+++ Gh_D08G2512 13 FVAKTYQMVNDPATDDLITWGKTNNSFIVIDPLDFSHKILPFYFKHSNFTSFVRQLNTYGFRKVDSDK---------WEFANEWFLRGQKHLLKNVV 100 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ Gh_D08G2512 101 RRKT 104 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.2E-37	7	97	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.7E-53	9	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.9E-33	10	102	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	5.1E-18	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.6E-30	13	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.1E-18	51	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	52	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.1E-18	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEAANCNDVV PPFVAKTYQM VNDPATDDLI TWGKTNNSFI VIDPLDFSHK ILPFYFKHSN 60 FTSFVRQLNT YGFRKVDSDK WEFANEWFLR GQKHLLKNVV RRKTGGNRCV RLKKGEVLDG 120 GSDGDGYDDG EIVMEIARMK EEQKWLEEEL KGMNERLETT ERRPKQMVAF LRQVVEDPGF 180 VLCLVLEKQR SRRIMLEKRR LKVVPPLAVS NNSVKYEGEG WHAELISSSS SPSPSPEDSM 240 VVLERRDIVG QVMNNGCGTI TSQSPVVVPP VNGNSTAVFS SGMSSLLGYG DGNGQLRYLG 300 DMAEVAGGTM EARVSLPYPF SLFGDGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-25	10	104	26	131	Heat shock factor protein 1
5d5v_B	3e-25	10	104	26	131	Heat shock factor protein 1
5d5v_D	3e-25	10	104	26	131	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ748614	0.0	KJ748614.1 Gossypium hirsutum HSF11 (HSF11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001314358.1	0.0	heat stress transcription factor C-1-like
Swissprot	Q9LV52	1e-74	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	A0A1U8MN92	0.0	A0A1U8MN92_GOSHI; heat stress transcription factor C-1-like
STRING	Gorai.004G280100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24566	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	5e-67	heat shock transcription factor C1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]