PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2380
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 458aa    MW: 50082.5 Da    PI: 8.2902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2380genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-116187127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C+++ rtG C++G++C+F+H+p
  Gh_D08G2380 61 PGEPDCSYYIRTGLCRFGATCRFSHPP 87
                 5789*********************97 PP
2zf-CCCH30.18.3e-10121141727
                  SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                  +++++tGtCk+G++CkF+H++
  Gh_D08G2380 121 HYYLKTGTCKFGATCKFHHPR 141
                  59*****************96 PP
3zf-CCCH36.58.2e-12163187327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  + +C +++rtG+Ck+G++CkF+H++
  Gh_D08G2380 163 ETECAYYLRTGQCKFGSTCKFHHPQ 187
                  578********************97 PP
4zf-CCCH37.83.2e-12319345127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG Ck+G+ C+F+H++
  Gh_D08G2380 319 PGQPECQFYMKTGDCKFGAVCRFHHPR 345
                  5789*********************96 PP
5zf-CCCH413.3e-13365391127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC+f++r+G+Ck+G++CkF+H++
  Gh_D08G2380 365 PGEPLCDFYSRYGICKFGPSCKFNHPM 391
                  589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.3096088IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-66087IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-86287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-56588IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-46686IPR000571Zinc finger, CCCH-type
SMARTSM003560.34118141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.681121142IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7121141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4122142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6160188IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338160188IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9163187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4166186IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6318345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596318346IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-9320345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5322347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4324346IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5362390IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7364391IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915364392IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10366391IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4369389IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MTAEWKLLFD AGISMSRIAS AVAVAVTEGA SLSPLLNQDA MWQMNLRSSE TMESGYYPER  60
PGEPDCSYYI RTGLCRFGAT CRFSHPPNRK LAIAAARMKG EFPERVGQPE CQACTYSLFS  120
HYYLKTGTCK FGATCKFHHP REQAGIAGRV SLNILGYPFR PNETECAYYL RTGQCKFGST  180
CKFHHPQPTN MMISLRGSPI YPTVASPTTP GQQSYPGGIT NWSRASFIPS PRWQGPSSYA  240
PLILPQGMVS VPGWNAYSAS VSSSENLQQT NGNNQIYGTS NQNESVTGGS QASFSQFRSG  300
SVPIGFYALP RENVFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERVPP APDCLLSPIG  360
LPLRPGEPLC DFYSRYGICK FGPSCKFNHP MGIFTYNYSI SSPSGAPVHH LLGSSSGTSG  420
LNLSSEGLVE SGSTKLRLIS LSENRQLSSS DDNIDTEG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691967.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U8JNX20.0A0A1U8JNX2_GOSHI; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGGorai.004G261700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1