PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Expression |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gh_D08G2158

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 173aa MW: 19103.8 Da PI: 7.2069

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2158	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.2	1.7e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vh++FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ l++q++ql+ +la+++ Gh_D08G2158 6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHRVFGASNVSKMLQELPVQQRADAVSSLVYEANARVRDPVYGCVGAISYLENQVSQLQMQLAVAQ 103 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Gh_D08G2158 104 TE 105 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.842	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGGSSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHR VFGASNVSKM LQELPVQQRA 60 DAVSSLVYEA NARVRDPVYG CVGAISYLEN QVSQLQMQLA VAQTEMLCIR MQQESALPMP 120 MPTQMQQDDK SFLAATNNLD NISQYLNFAS SSSSSSSNVI QDPSALKRES LWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-50	2	123	7	128	LOB family transfactor Ramosa2.1
5ly0_B	7e-50	2	123	7	128	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615783	1e-130	JX615783.1 Gossypium hirsutum clone NBRI_GE59976 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478005.1	1e-119	PREDICTED: LOB domain-containing protein 12-like
Refseq	XP_017618917.1	1e-119	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-74	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0D2S4Q2	1e-118	A0A0D2S4Q2_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5XUA9	1e-118	A0A2P5XUA9_GOSBA; Uncharacterized protein
STRING	Gorai.004G234100.1	1e-118	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-75	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]