PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G1546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 374aa MW: 41707.8 Da PI: 9.8582 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68.5 | 1.3e-21 | 56 | 147 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+a+r+++ +lrrg+lk+ +W+ev++++ ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a Gh_D08G1546 56 CWSHDETVALIDAYRDKWYTLRRGNLKASHWQEVADAVtrrcPMATPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFVSSWVHFKRMDA 147 7*************************************64442233489*************************97799***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.5E-23 | 55 | 148 | No hit | No description |
SMART | SM00595 | 1.9E-13 | 64 | 153 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MSNPSSPSPE QGIPSNTSPP PPSETLLSLP APPTSRSTPS ATATVTPNPR RLPPPCWSHD 60 ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVTRRCPMA TPPKTAVQCR HKMEKLRKRY 120 RTEIQRARSM PVSRFVSSWV HFKRMDAMEK GPNVKADYNS DSPDDENGDD EEDGQDQEFY 180 DDGYKNGSLN TRSVQKLYRN GIGNNGGSVS GDGNSGGFRI RIPTGVSIAQ PGPRFYGKID 240 HKYGTNPNPN PNVNANSHPS KGNFGGSGSG SAYGTRILRG FEDMPEKTAA SGKRERERDA 300 VTEMVSAIKV LGDEFVRMEQ MKMEMAREIE TMRMEMEMKR TEVILESQQR IVEAFAKAVS 360 ERKKKPKRMP SPQS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2829 | 0.0 | boll| ovule| root |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017626273.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A218KFA7 | 0.0 | A0A218KFA7_GOSHI; Trihelix transcription factor | ||||
STRING | Gorai.004G167100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8963 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 7e-82 | Trihelix family protein |