PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1514
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 277aa    MW: 31078.5 Da    PI: 4.9364
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1514genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014163185123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+k+F++   L  H  +H
  Gh_D08G1514 163 YRCETCNKVFNSYQALGGHRASH 185
                  9***********99999998887 PP
2zf-C2H212.90.00033212234123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp C k+Fs+   L  H r+H
  Gh_D08G1514 212 HECPVCFKVFSSGQALGGHKRSH 234
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.014163185IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.17E-9163234No hitNo description
PROSITE profilePS5015710.658163190IPR007087Zinc finger, C2H2
PfamPF139124.3E-12163187IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
PfamPF139121.2E-11211234IPR007087Zinc finger, C2H2
SMARTSM003550.11212234IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEKVKCKQLC LKSFANGETQ LRSNMLNLPI PPNVEQESAS PSYSSSSSEE KGQFYGLREN  60
PKRSIRFVDP EFVDADSVVV QSKESETESS KYPTQKRSRR TWDEPEPASS LSDTTTEEDI  120
AFCLMMLSRG QWKSKVAQHD DIDDEEEETD ESAEFNRTTR GKYRCETCNK VFNSYQALGG  180
HRASHKKIKA FETELAPENV GTTCSMTEKK THECPVCFKV FSSGQALGGH KRSHVAAATA  240
QTYVKSSNKL VVNFIDLNLP APVDDDDDDD DGFLMLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6162711e-113JX616271.1 Gossypium hirsutum clone NBRI_GE60799 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016682053.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1U8J0D80.0A0A1U8J0D8_GOSHI; zinc finger protein ZAT9-like
STRINGGorai.004G164000.11e-170(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-49C2H2-like zinc finger protein