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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_D08G1338 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
MYB_related |
| Protein Properties |
Length: 455aa MW: 50731.7 Da PI: 9.6713 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D08G1338 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 25.1 | 4e-08 | 129 | 171 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+WT+eE ++l d+++++ + + Ia +++++Rt +++k+r+++
Gh_D08G1338 129 KWTKEETDQLFDLCERFDLR-FIIIADRFPTHRTVEELKDRYYS 171
8*******************.*********************96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0000812 | Cellular Component | Swr1 complex |
| GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 455 aa
Download sequence Send
to blast |
MDAKDILGLP KTPLPIPQEK KSRPQKDSQR KPDGISREVY ALTGGVAPLM PSIDVSQLKR 60
RPPSDEKITW QWLPFTSSAR KDDLQLYHWV RVVNGVPPTG DYSFAKYNKS VDVIRYTDEE 120
YEKYLTDPKW TKEETDQLFD LCERFDLRFI IIADRFPTHR TVEELKDRYY SVSRAILVAR 180
APSPGEVAGH PLVKEPYNVT QETERKRALS MVLSQTKHQE RKDAEVLAEA KRIAESRMAA 240
RAAEEPDLPV PSDVGLESAE GAVGPGDTIS PSNVQAPAAA IAPSTSVIAD NASTLASLRM 300
LRVYLRTYAL EQMVQAASSS AGLRTIKRVE QTLQDLGVNL KPKVPTKAVC AEHLELRKEI 360
LTLLNLQKQL QYKEAEGSSF RDGSYGDMPG TAKRSQRAAD QDRTFVPDTI SFGVIPGDRV 420
VKREQKRKGP GRTSETPSSP AGAHKRPRKM KASDL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3hm5_A | 6e-21 | 101 | 185 | 4 | 91 | DNA methyltransferase 1-associated protein 1 |
| 4iej_A | 6e-21 | 101 | 185 | 4 | 91 | DNA methyltransferase 1-associated protein 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ526918 | 2e-75 | HQ526918.1 Gossypium herbaceum clone NBRI_A2_3058 simple sequence repeat marker, mRNA sequence. |
