![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D08G1333 | ||||||||
Common Name | WRKY103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 288aa MW: 32589.4 Da PI: 7.2825 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.1 | 4.2e-34 | 151 | 208 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+vers +dp++v++tYeg+H+h+ Gh_D08G1333 151 EDGYRWRKYGQKAVKNSSFPRSYYRCTTTSCNVKKRVERSFTDPSMVITTYEGQHTHP 208 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 1.5E-98 | 1 | 288 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 6.9E-35 | 135 | 210 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-29 | 142 | 210 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.871 | 145 | 210 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-40 | 150 | 209 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-27 | 151 | 208 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MESKEGVLKM EEELGNSFSD YFPLQSIFDW SFEGGENMPL GFMELLGVQD LKPPLFDMGQ 60 QQAPSAVVNQ ALNPCSTKNE RFNYQPATPN SSSISSASSE AVNDEPIQVD DDQEEDQQKT 120 KKQLKPKKTN QKSQREPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSSFP RSYYRCTTTS 180 CNVKKRVERS FTDPSMVITT YEGQHTHPSP IMPRSSLAGG AGSAPYHYRQ QRQPFVNTLP 240 PLNFGHSNGS IKAGNFHHER RFCSPGSSLL KDHGLLQDVI PSHMLKEE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-26 | 143 | 210 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-26 | 143 | 210 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.959 | 2e-97 | leaf| ovule |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF031102 | 0.0 | KF031102.1 Gossypium hirsutum WRKY transcription factor 65 (WRKY65) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016694233.1 | 0.0 | PREDICTED: probable WRKY transcription factor 23 isoform X2 | ||||
Swissprot | O22900 | 1e-61 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A1U8JZR8 | 0.0 | A0A1U8JZR8_GOSHI; WRKY transcription factor | ||||
STRING | Gorai.004G144900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6152 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47260.1 | 1e-52 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
---|---|---|---|
|