PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 676aa MW: 75668.8 Da PI: 6.356

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G1276	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27	7.7e-09	433	470	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Gh_D08G1276 433 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 470 554459******************************88 PP
2	BELL	114.1	7.4e-37	295	363	2	70
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 ++elqk+k+kLls+leeVd+rY++y +q+++v+ssFeavag g+a +Y lA+ka+SrhFrcL+d+i++ Gh_D08G1276 295 FMELQKRKTKLLSMLEEVDRRYRHYSHQMKAVVSSFEAVAGSGAASVYSDLASKAMSRHFRCLRDRIVG 363 589****************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.4E-52	232	363	IPR006563	POX domain
Pfam	PF07526	7.8E-45	238	362	IPR006563	POX domain
PROSITE profile	PS50071	12.6	411	474	IPR001356	Homeobox domain
SMART	SM00389	2.0E-9	414	478	IPR001356	Homeobox domain
CDD	cd00086	1.27E-11	414	475	No hit	No description
SuperFamily	SSF46689	5.99E-17	415	481	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-27	417	480	IPR009057	Homeodomain-like
Pfam	PF05920	9.1E-18	431	470	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence Send to blast
MVRELCEDKP RNIVSSTGFC YSDVSSGSSH PVSQIQGFES NPDPDIFNLA TGMEMIGFSK 60 NLPQQGDSYT AVWKGSLNKH GSNPDPSSNT INESKSDFYQ HEFNKPEFTA GISETETSTG 120 NLIVGAETGP WQENRLLVDD SSYRCVFPCE GNERPSQSLS LSLSSNNPST IGLQSFELRQ 180 TTSHSNHDQQ HDMRFIGSNS RDGFFEKAAN IQQQQQQAIQ SEFLEEAANL HHQGQFQVGS 240 SKFLVPTQEL LNEFCSLGTT QVDASKEKQI HKTKQCDDDN GASSSWKQPL YSLNFMELQK 300 RKTKLLSMLE EVDRRYRHYS HQMKAVVSSF EAVAGSGAAS VYSDLASKAM SRHFRCLRDR 360 IVGGIQATRK AIGEKDPVAP GTRRGETPRL KIIDKALRKQ RCFQQMNMME NQPWRPKRGL 420 PERSVSVLRA WLFEHFLHPY PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEIY 480 MEETEEHENN MASSDAVTTI DGDDNIGRPN PNILLTDQKP TPDQLVRIDS ECLSSIVSND 540 PEKNDAKSAK TLQNQHLHQH HYQKQSFETS GIMELDFSSY SHHHTSGGAS YNGSDYNANQ 600 SCFNGGGSVS LTLGLQQHGG TGVSLAFSPA AQSSIFYPRD HIEDCQPVQY SLLDGEAQHL 660 PYRSLIGAQL LHDFTG

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence Send to blast

MVRELCEDKP RNIVSSTGFC YSDVSSGSSH PVSQIQGFES NPDPDIFNLA TGMEMIGFSK  60
NLPQQGDSYT AVWKGSLNKH GSNPDPSSNT INESKSDFYQ HEFNKPEFTA GISETETSTG  120
NLIVGAETGP WQENRLLVDD SSYRCVFPCE GNERPSQSLS LSLSSNNPST IGLQSFELRQ  180
TTSHSNHDQQ HDMRFIGSNS RDGFFEKAAN IQQQQQQAIQ SEFLEEAANL HHQGQFQVGS  240
SKFLVPTQEL LNEFCSLGTT QVDASKEKQI HKTKQCDDDN GASSSWKQPL YSLNFMELQK  300
RKTKLLSMLE EVDRRYRHYS HQMKAVVSSF EAVAGSGAAS VYSDLASKAM SRHFRCLRDR  360
IVGGIQATRK AIGEKDPVAP GTRRGETPRL KIIDKALRKQ RCFQQMNMME NQPWRPKRGL  420
PERSVSVLRA WLFEHFLHPY PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEIY  480
MEETEEHENN MASSDAVTTI DGDDNIGRPN PNILLTDQKP TPDQLVRIDS ECLSSIVSND  540
PEKNDAKSAK TLQNQHLHQH HYQKQSFETS GIMELDFSSY SHHHTSGGAS YNGSDYNANQ  600
SCFNGGGSVS LTLGLQQHGG TGVSLAFSPA AQSSIFYPRD HIEDCQPVQY SLLDGEAQHL  660
PYRSLIGAQL LHDFTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-15	420	478	5	63	Homeobox protein Meis2
3k2a_B	2e-15	420	478	5	63	Homeobox protein Meis2
4xrs_A	2e-15	420	477	1	58	Homeobox protein Meis1
4xrs_B	2e-15	420	477	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	72272181	1e-107

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269\|PubMed:8521490}.
Uniprot	TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269\|PubMed:8521490}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474926.1	0.0	PREDICTED: homeobox protein BEL1 homolog isoform X1
Swissprot	Q38897	1e-137	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A0D2QXA7	0.0	A0A0D2QXA7_GOSRA; Uncharacterized protein
STRING	Gorai.004G139300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5866	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-115	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]