PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G1159 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 337aa MW: 36655.8 Da PI: 5.9635 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 22 | 72 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a++ a+++l+g+ Gh_D08G1159 22 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRGA 72 689******.7*********....4456*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.508 | 22 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-29 | 22 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-36 | 22 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-12 | 22 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.35E-17 | 22 | 79 | No hit | No description |
PRINTS | PR00367 | 1.1E-7 | 23 | 34 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-20 | 23 | 79 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-7 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MVIPTSVDGV RGRKKSSRGH HRFVGVRQRP SGRWVAEIKD SLQKVRLWLG TFDTAEDAAR 60 AYDDAARALR GANARTNFEL PPSASKTTAN RVSLDNIEPF SFEEVCGTGN DADGFLGALK 120 AKLLDGKGIK VLSPANHAAL QPIVASNSSQ NNKNVSRESR TTTVAPQGIR NMNPVQGPLN 180 PGSSKPDLLN HDQVAANHIG VQWPQPQPGQ SQIESMASMM WSNEPSFEAE WGTQMNQVPP 240 NGFFNITTCT AAATSTWPLS GTTESTMDLS YSDQCPIELQ MNMNGKTNML SMPMSQIDET 300 AEGVWPSHQQ FEQCDNNGWS SANGSWDPYL YVSSVLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 20 | 78 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474746.1 | 0.0 | PREDICTED: uncharacterized protein LOC105791278 | ||||
TrEMBL | A0A0D2R3R8 | 0.0 | A0A0D2R3R8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G127900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15994 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-16 | related to AP2 11 |