PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G0770
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 473aa    MW: 50815.1 Da    PI: 8.9128
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G0770genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-115076127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++ + C +++rtG+C yG+rC+++H++
  Gh_D08G0770 50 PGVPDCVYYMRTGFCGYGNRCRYNHPR 76
                 57899********************96 PP
2zf-CCCH40.15.9e-1395121127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C+f+++tGtCk+G++CkF+H++
  Gh_D08G0770  95 PGEPACQFYLKTGTCKFGASCKFHHPK 121
                  57899********************96 PP
3zf-CCCH37.73.5e-12142167227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++++tG+Ck+G +CkF+H++
  Gh_D08G0770 142 GEKECSYYLKTGQCKFGVTCKFHHPQ 167
                  7899********************97 PP
4zf-CCCH352.4e-11298324127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++rtG Ck+G++C+++H++
  Gh_D08G0770 298 PGERECQYYLRTGNCKFGSSCRYHHPR 324
                  5789*********************96 PP
5zf-CCCH32.71.3e-10345369226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +  +C f++++G+Ck+G++CkF H+
  Gh_D08G0770 345 GVQPCAFYLQNGHCKFGSTCKFYHP 369
                  6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.7E-74976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3144977IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-85176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-65477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45576IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-794121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.01494122IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-1096121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-698121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4100121IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84140168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6142168IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4146166IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-6297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07297325IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6300326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4303324IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544343371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-7345374IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8345369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5347369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MELYGQNPAR NGSFSGHQLE WIPAGPETGG LEESMWQLSL RGTGSYPERP GVPDCVYYMR  60
TGFCGYGNRC RYNHPRNRAA VEAAVRATGE YPERPGEPAC QFYLKTGTCK FGASCKFHHP  120
KHGGGSFGHV PLNIYGYPLR PGEKECSYYL KTGQCKFGVT CKFHHPQPAG TSMPASAPQF  180
YQPVQSPSVP LPEQYGGAPT SVRVARPPLL PGSYVQGAYG PVLFSPGVVP IPGWSHYSAP  240
VSPALSPGAQ PAVGATSLYG LTQLSSSAPS LAGPYSSLPS STGPSSSNQK EQTFPERPGE  300
RECQYYLRTG NCKFGSSCRY HHPRDKVVQQ TNCILSPMGL PLRPGVQPCA FYLQNGHCKF  360
GSTCKFYHPI GTMRYSPSAS SLIDIPVAPY TVGSLLATLA PSSSSSELRP EMISRSKKDS  420
YLSRISSSAS TASSSVGLIF SQTGSVHFSD FQLSSQSLSS SRSTIQGAEV HSN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.19430.0boll| leaf| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150416e-70AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016697359.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1U8K9Q00.0A0A1U8K9Q0_GOSHI; zinc finger CCCH domain-containing protein 32-like isoform X1
STRINGGorai.004G086700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein